XLOC_002245


Basic Information

Item Value
gene id XLOC_002245
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33360328 ~ 33368165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005723
AAACGAATGTCTGTGGCCTGTGCTTTTGGTGAATTTGTTTGACCAGGTGTGTGTCAGGCTTGGCAGAGATTGCAGATCTCTCCAGTATATCCTATTCACCGGCTCAACTGCAAGTATGGGTGGAGTCAGTCGAAGCTCCACCCATCTCTCACAGCAGAGGACATCCAACCTGTAACAGCACCCCACGCAGCCCAAAAGGCCATAGGACTCATCTTCCTGTTGGCACTGAGCAGCTTCCTCATCTCCAGAGCCTTTTGGACACTACACCACAGAGCATCTCTTCATCTCATACTGTCTGCACAGAGAGCTACGCCACAGCCAGATCTGGAGACACCAGCactACAAACACCTCTGTGTCCAGCATCCTGCGGTCTCCAGCGATAAAAGATGCATCTAAGCCGGAAACAGACTCTCCTTCCAGCGCAAATGCAGAGTTCACCACTGCCAGCTCTGGAGCCAGACAGACCACCGAGAGTAGCCAAGGAACAAATGAAGAGACGGAGCAGCCTGTTGAACGTAGGCATTTACAATTTATCGCTGTACACCTTTTTCATACGTCCCATAAAGCATTTTGTGGGAGTAActgtaaagattttaaaaagcatgtaaTTCGAATTAACAATTCACCTTTAGTTGGCCAAAGGGTCTTTCTGAAATGTTTTGGACGAACAAAAAAGTGAATCAAA
>TCONS_00004292
ATTCTATTGGCTAGTTTTGTCTATTTTCacacattgtatttttattacagGCCATAGGACTCATCTTCCTGTTGGCACTGAGCAGCTTCCTCATCTCCAGAGCCTTTTGGACACTACACCACAGAGCATCTCTTCATCTCATACTGTCTGCACAGAGAGCTACGCCACAGCCAGATCTGGAGACACCAGCactACAAACACCTCTGTGTCCAGCATCCTGCGGTCTCCAGCGATAAAAGATGCATCTAAGCCGGAAACAGACTCTCCTTCCAGCGCAAATGCAGAGTTCACCACTGCCAGCTCTGGAGCCAGACAGACCACCGAGAGTAGCCAAGGAACAAATGAAGAGACGGAGCAGCCTGTTGAACGTAGGCATTTACAATTTATCGCTGTACACCTTTTTCATACGTCCCATAAAGCATTTTGTGGGAGTAActgtaaagattttaaaaagcatgtaaTTCGAATTAACAATTCACCTTTAGTTGGCCAAAGGGTCTTTCTGAAATGTTTTGGACGAACAAAAAAGTGAATCAAA
>TCONS_00004293
atttgttattttttccatTAATATAATCACATTTGCAGTGTTTCTATTGATATCTGGCATGTCTTTTCAGACAAACACCTCTGTGTCCAGCATCCTGCGGTCTCCAGCGATAAAAGATGCATCTAAGCCGGAAACAGACTCTCCTTCCAGCGCAAATGCAGAGTTCACCACTGCCAGCTCTGGAGCCAGACAGACCACCGAGAGTAGCCAAGGAACAAATGAAGAGACGGAGCAGCCTGTTGAACAAAACAATGATGTGGATGAGAAACGTGAAGACCAGTCAGATTGTGAACATCTGTGTGAGAAAGATGCTTATGATGAGGAGCGATTTGATGATGACGGGATCTCAGAGAGAAAGGAAGAGTGTGAAGGTGAAAACCAGTGTCAGAATGATTGATGATAGATCTATAGCAGGACTTGAAGTGATGAGCATTTGTGGTTACAGACCGGCATGGAGATCTCAACTGGGCTGATGTGGACACTAATACAGACTCTCAAAAAAGCAATAAGAGTCCCAGTCTTGATGAAACTGAGAGGTAAAACACTATATACAAAAAAGTACATGCAGAATTATTTTACAGCTGTTTGGATAGAGAAAAGCATCTGAATTTAACGTGATATTGTCCTCTGAGGTGTTCAGAAGtgaaataagtataaaatataaaagtgaaaACAGAAATTATAGTGACAttgactgtaaacatttattgtgtatgtcaAGCTTAAAGgcgtagttcacctaaaaatgaacattctgtcatcatttacttatcctccccttgttccaaacctgtttgagtttttttttctttctgttgaatACTATTGATGAtaaactgaagaatgttgggggggaaaggtcattgacttccatagtattgttttccta
>TCONS_00005724
GATTTTAATATTGATTTTAACAAGCACTGTAGTGAGAAagtcatttgtttgtgttttctgcAGAAAACAATGATGTGGATGAGAAACGTGAAGACCAGTCAGATTGTGAACATCTGTGTGAGAAAGATGCTTATGATGAGGAGCGATTTGATGATGACGGGATCTCAGAGAGAAAGGAAGAGTGTGAAGACCGGCATGGAGATCTCAACTGGGCTGATGTGGACACTAATACAGACTCTCAAAAAAGCAATAAGAGTCCCAGTCTTGATGAAACTGAGAGGGCAAGTTCCACCCTTGATGAGGATCTGCAGAAAATGCTTTTGGAAATAGCCGCAGGACAGGGAACTCCTAGAGGCCCAGGGGCTCTGCTGTGTCAGTCTGATATTAAAGGAGAGGGAGATGTGAGAGACTACATCTAGACAGCAGGTGAGTGGAGAGATGTAATGAGGTCGTTTTTAGCCTCAAAAGCCAAATGCAGTGTTTAACAGTTGTGGTTTTTCTCTGTAGACAATATAAATGAGCTGGAAGAGAAGACGGAGGCAGCTGATCAGGAGAACCATCCTAACAGGTGCGCAAGAAGCATAAAACATCTTGATTAACACAATGCCAATAATCCTACTGTTTATTAAAGGAATAGATAGGTTGGGATacactaatggcccgtttccattgAGTGGTACTGTACGGGTCACCTCTATCAGGCTTGCATTTACACTGCCATAAGGGTATCaattggtgggtgtggtgtacgacagaaagatTCAGAcgacgtcattctcgcttgaggaaatgtctacgggtcgttcacatatcatacgagaagcacttctcacagaacaaatgttttatacaca

Function

GO:

id name namespace
GO:1902299 pre-replicative complex assembly involved in cell cycle DNA replication biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0036388 pre-replicative complex assembly biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0033260 nuclear DNA replication biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0042555 MCM complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0070035 obsolete purine NTP-dependent helicase activity molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005723 False 686 lncRNA 0.48 3 33360328 33362580
TCONS_00004292 False 538 lncRNA 0.44 2 33361020 33362580
TCONS_00004293 False 889 lncRNA 0.39 2 33362166 33364108
TCONS_00005724 True 854 lncRNA 0.43 4 33363402 33368165

Neighbor

gene id symbol gene type direction distance location
XLOC_002244 NA coding upstream 1302 33357096 ~ 33359026 (+)
XLOC_002243 NA coding upstream 94641 33265381 ~ 33265687 (+)
XLOC_002242 myl10 coding upstream 180340 33171501 ~ 33179988 (+)
XLOC_002241 CU929186.1 coding upstream 357895 33002319 ~ 33002433 (+)
XLOC_002240 ppm1e coding upstream 571496 32683089 ~ 32788832 (+)
XLOC_002246 mdh2 coding downstream 14693 33382858 ~ 33403522 (+)
XLOC_002247 ryr1a coding downstream 38654 33406819 ~ 33540336 (+)
XLOC_002248 cfap298 coding downstream 205673 33573838 ~ 33579162 (+)
XLOC_002249 mis18a coding downstream 220550 33588715 ~ 33594110 (+)
XLOC_002250 b3glctb coding downstream 258179 33626344 ~ 33710227 (+)
XLOC_002237 NA non-coding upstream 768257 32584417 ~ 32592071 (+)
XLOC_002235 CR388187.1 non-coding upstream 964432 32395780 ~ 32395896 (+)
XLOC_002252 NA non-coding downstream 502024 33870189 ~ 33871012 (+)
XLOC_002255 BX548044.4 non-coding downstream 667524 34035689 ~ 34043319 (+)
XLOC_002257 BX548044.5 non-coding downstream 740376 34108541 ~ 34120301 (+)
XLOC_002258 BX548044.1 non-coding downstream 756256 34124421 ~ 34147245 (+)
XLOC_002259 BX548044.2 non-coding downstream 783121 34151286 ~ 34171425 (+)

Expression


Co-expression Network