XLOC_002249 (mis18a)


Basic Information

Item Value
gene id XLOC_002249
gene name mis18a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33588715 ~ 33594110 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004300
GCTGCGTGGTGGTCAACTTAGCTGCAAGTTCACAGAAGAACTGCTCCCGCGTACGTTTGAAAACACAGGGTGTTCAGATGGCTGGCAAAATTAAAATCCCCGATGAATGTAGCCATAAAACATACTCTGTTTGCGAGAGTACCGCTGACAGCAGGAGTAGAGTGGAGGAAGATGGAGAAAGCGACGGTCCAGCGGTGTTTATGTGCGGCAAATGCAAGCTGCCAATCGGAGACAGTCTGTCCTGGGCTGGCAGCGATGATGAGAACAACCAAATCATGCTCAAACGGATTACTGACAACATTGTTGTAGGCAAAGAGCCATTTGTTTCTGGGACCCGAAAGGAGCTTGGATGCCTTGTTGTGAATCTCACCTGCCGTGGCTGTTGCTCAGAATTAGGAGTCATGTACATATCAACCCCGAAAAAGCTGGATTGCAAGAGATCCCTTTTCTGCTTTAATGTGGAAAATATTGAAAGCTATGTAGTGGGAAGTCCAGGCCAGCAAATGCCAGAATTAGACAGAGAAGACAAACCAGTGACCCTGGAGTACCAGGACACTGTGCATCAGCAGATGACAGAGATAACATCTCTAGCAGTGATAATAGGACAACGCCTGCTGGAGATTGAAAATAACCTCCAGTGCAGTTCAGAAAAATGATAAGTGCTTTTGCAAGGGGAATGTCTGGTTTTGGGTGAAAATCACACATCCTCAATGAGGTTTTGGTGTAAGATATTTTTGTCTTAGCAGTAATGGATTTATACGTTGATGCTATATAAATGTATGCAAGTAACAAACATACATTTTGTAATATCTTTTCATTAACACCATGAAGGGAATTTTCTGAAATCTGTACAGTTATGGGACAATTCAAGAGACCACCTGACAATTCTCAGCTTCTATGACTTAATTaggaatatattatatatatatatatatatatatttgtgtatgtttatgcatattttgttattaaataatgtatatttagaAAAATCTCAGCAGACTTACTGTTTATACAATaaaccaaatattaacattatactCAAACTCAtacttattaaattattagaaacACACATGTTTTCAAGCTATCTCTTGTTTGTTTTTCCCAtgactgtagatagatagataaataaatatattaaatattataacctTATATTATTCTTAAAACATGTAAATATGTTTGTGTTCATCTATATTGTCAGAAGCGATcttggttgttgttgttattgtcgaGTGACGTAATACACGATGGATATATGTACAATAAACGTAATGCTAAAGCACC

Function

symbol description
mis18a Predicted to enable metal ion binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in chromosome. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Orthologous to human MIS18A (MIS18 kinetochore protein A).

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-314 Predicted to enable metal ion binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in chromosome. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Orthologous to human MIS18A (MIS18 kinetochore protein A).

Ensembl:

ensembl_id ENSDARG00000035333

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004300 True 1290 mRNA 0.38 5 33588715 33594110

Neighbor

gene id symbol gene type direction distance location
XLOC_002248 cfap298 coding upstream 9553 33573838 ~ 33579162 (+)
XLOC_002247 ryr1a coding upstream 48379 33406819 ~ 33540336 (+)
XLOC_002246 mdh2 coding upstream 185193 33382858 ~ 33403522 (+)
XLOC_002245 NA coding upstream 220550 33360328 ~ 33368165 (+)
XLOC_002244 NA coding upstream 229689 33357096 ~ 33359026 (+)
XLOC_002250 b3glctb coding downstream 32234 33626344 ~ 33710227 (+)
XLOC_002251 rxfp2a coding downstream 149988 33744098 ~ 33867426 (+)
XLOC_002252 NA coding downstream 276079 33870189 ~ 33871012 (+)
XLOC_002253 fryb coding downstream 301205 33895315 ~ 33999781 (+)
XLOC_002254 kl coding downstream 407334 34001444 ~ 34026125 (+)
XLOC_002243 NA non-coding upstream 323028 33265381 ~ 33265687 (+)
XLOC_002241 CU929186.1 non-coding upstream 586282 33002319 ~ 33002433 (+)
XLOC_002237 NA non-coding upstream 996644 32584417 ~ 32592071 (+)
XLOC_002255 BX548044.4 non-coding downstream 441579 34035689 ~ 34043319 (+)
XLOC_002257 BX548044.5 non-coding downstream 514431 34108541 ~ 34120301 (+)
XLOC_002258 BX548044.1 non-coding downstream 530311 34124421 ~ 34147245 (+)
XLOC_002259 BX548044.2 non-coding downstream 557176 34151286 ~ 34171425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16238051_16240914 MIS18A coding CI01000304 null 16238051 ~ 16241294 (+)