XLOC_002237


Basic Information

Item Value
gene id XLOC_002237
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32584417 ~ 32592071 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005914
cttatttctaataacggatttattttatctttgtcatgatgacagtaaataatatttttcaaaacacttctgtacagcttaaaatgacatttaaaatgttttttttttttaaatgtaataacggcttttattctagccgaaaaaaaacaaataagactttatccagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaaaataatttgggaaatataaaaaaaaaaatcaaatcaaaagggggctaataattctgacttcaactgtatatctgaaTAAAGGACCATATTTTTGAGGCAGCCTGATGATGTAGAGGCAGATGAAGATCTTCTGTAGACGGGAAATTTATCCACACTATTATGTAATAAACAAGCAAAATCCACATCCTGTCATTTTATCAGATTGGCTTCAATGGACTTTATGcatagctagtgtttttcagcaaaTGATGAAattccggtgaaagctttatgtgactatttacaatttcataaggttccttttacagcattgatgctgtaatgtaatttaaatacattcagttaaatagtcttaagcatccatttgtttgttaaaccataaaaagagacaaaagacaGTTTAAACGCAGCAGCAGGTTAGAGCAGTaaatctattgaaaatactggggtgaaattattttccatattttatAAAGACACAGCGTGAAAAactataatttaatgcagtgctttttgtttggTCTTCTATACCACTTCATATCGTATCttagccaggcagtgaagattgcttttttttaaagaaattggaTCTTAAACGGAgagattttgtatgggatgacaattaactaGAAGCcttggggctggctgactgaaattaaaagtctgtttgCATATACTCCTATACgccatttattctgtttttagaccaaataaaaaaagacaatgagTATTACTAATAGTTTTATAGTAGGATGACATTATGCCAAAAGAACGAGCACATCTTGTTTTcacagttcatgacccctttaattaCTCTCTTTGTGTTCCTGCTAAGTTTAAGAACCATTGCATATCACTTAGGAACCGAGCATCAAAACAAGTCATCAGATAATTAGGCCTTGTTTCAGCTCACTCACTTTGTTGCCTGGACAACCAACCGGATTACTGTAACATgatattgcattatgggatgtacTGTACATTTGTCATTGGCTAGATTAGGATTTAAATGTTCACTGTGATAGAAATTCATTATCaactaaaatatgttttgtatGGTTTTCCTGGGGTTTTCTATCATGAACCAGAACACATGTAAGGACTGCATCACTAATTTGAACACTATATAATTCCCCACCCCCCTAAGGGAGCCCCCAAGGTAGACAGATGGGAGATCCCAAAAGTAGAGGGCACTCAAAATGTCACTAGATTAGCCAGCTTTAAAATCAAAGCCCCTCTTTATGTGAATGCAGATTCtgcttattaattattaatgtgtCTCCAGCTTTGTTTGCTCCTGCATCCCCCCTGTTGTTCAATGACTGACATGACCTGTATTCTCCACTAATTGTTCTGTTTATTATCATGTGTTCTCCTTGATGTATTGGTAAGTCGAATGCAGTCTGTTCGGAATGCTGTTTGTTTACTCTCGACTGCATGATCATTGTCATCTTTGTTTACGGTTGTTTGCTTTACAAAACCATGCAAAAGTAGCGTTCAGCTCTCATCACAATCCCTCAGTCAACCTCAGTGAGGTTGTGAGTTGCAAatgtaaaggaatagttcacccaaaaaatgaaaatgtacttctacaatattttttctaGTAACCCATCGTttattcaaaacctatttgagtttcttctgttgaacacgaaagaagatattttgaagaatgctggttgttgGTATCCACTTACTTTCATAGTCTTTGTTTCTACTATAGGTGCCAGTAATCAGCATTcgttaaaatatttagatttttgttcaacagaaacccttaaaggtttaaaaccacacgaaggagagtaaatgatgagttaaTTTTCCTTTTAGGgataactatccctttaaaccttATTTAAAGAGATGGATTacccaaaaaaatacatttatcactgtttattcagtcaagtggtttcaaacttttatcATTTCTTTATtcagatgaacacaaaagaagatattttgaagaatgctggttgttgGCAACCACTGACTTCCTTTGTATTTTTTCAACAATTGGTGCCAGcaataaacattctttaaaatatcttcttttgtgttcaacaaaagaaagaaactaataaaggtcTAAAACCACACAATGGAGAgaaaatgatgaggtaattttcttttttggggttGAATATCTTTAAACCTAACTTAAAGTCATAGTTTAcccatacattttatttataactgtttattcactctcaagtggtttcaaacctttatgaatttctttattcacacaaaagaagatattttgaaaaatgctggttgttgGCATTCACTGACCTCCATGGTATTTTCCAACAATTGGTGCCAGcaataaacattctttaaaatatcttcttttgtgttcaacagaagaaaaactcaTAAACAAGTGAGAGCAAAAATAATAagcaaactttcatttttggatgaactatccctttaaacctaactcaaaggcacagttcacccaaaaaggtgAACTATGAAAAATTAAGATTTTATTCACTCTTAAATAGTTTCAAACCTTTCAGAATTTCTTAATTCTGATGAACACTGAAGAAGACATTAAAGCTGAAAACCTTTTACTATTGATTTACATAAAACAGATACAGTACTATGAAGGTCAACGGTTATAGgttgagcatttttttttaaatatcttcttttgcgttcaacagaagcaagaagCACAAAACTATGAAGAAGTGAAGGGAGAGTCGATAATGAGCTAACTgtaatttttgggttaactatcccttttagcctgggattgttcacccaaaaatttaatttactcactgtttattcactctcaagtggtttcaaacgttacagaagatattttgtagaaagctgaaaccctgcaaccattgacttccataaaacaaatactatgaaggtcaatggttacaggtttccagcatttttctaaatatcttattttgtgttcaacagaagaaactcaaatcaggtttggaacaagtagggTGAGTCGATAATgagaaaattagatttttttggggtaaactatcgctttaaagagaaaaaaaaatgtcatcataTACTTATTTTGAAGGCCTGATGGTGTGTAGTGACTGTTACAATGTTAAAAGCCAATAAACCCAGATATTGGCTGTGGCGATGATGTAATGGGTAGGTGTGTCTCTGTGACTCCGCCTACTTtgacactgacatttatttagttgtttctCTCTTTAGTCTGTGAATGTCAGAAATAAATACAGAAGTAAATACAGAAAGTAATTAAAGTATACATTTAATTGAaagcaacagttttttttaattgttaagtAGTTTAATGCTGTGTGTTTTAAAGATTACAAATTACAGTATAAAGTGCTATATGAGTTAAATTAAAGGCACATGACTTGACTGCAGAGCTTGTTCAAACATTCACAGGTGCTTTCTTAACTGctgttttcattttagttgtgTGTATATTTTGTTATGAAGAGCTAAGAGTGCAGCACACATTAACATATTCATCTAAATGCCATCGGGTCATCTCAAAGgcattttaaatatctttatacCCCAATAGGAAGCTTTCTGTCTGcataaggatgagtaaatgatgacattattttcaatattttagaACAATCTTAAAATCTTGGCGATACGTTTACAGAGGTGATTTTATGTTGGTAGGTTTAATCTGATCATGTTACGGCACATAATCATGACCATCATTTTTCCTTGCATGTGACATGACGCTGTCACAAATTCATGTCTTTAGTTTATGACGGGAGATCTGAAGATGGTTCATGCGACCGAAttgctttcattttattatactGTCTTCATCTGCTGGCATTATGAGAGTGCATTGTGTAAGATCATGCTTTGCTTTACTTTATGTCATGTACCTCCCCCCTCTGCAAatcctctctctgtctctggTCTCATCCGTTGAGGTCGTCTTCATTTTTCAGTATGTCAAGTGTGtgatctcattgtcatgtttGCGCAATCAGTGCACAGCAAGTCTGTGATCTACAGCCAGGTTGAAGAAATTCACTTAAAGCCTGTATACATAATGCATCCTGAaagattttaatcatttattttatcatgATTGGACAGTAGGgacagttggcttttctgtgtggagtttgcatgttctccctgtgttggcgtgggtttcctccaggtgctctggattccctcacagtccaaagacatgtgatataggtgaattgaataagctaaattgtcagtagtgtatgggggtttcccagtgatgggttgcagctggaagggcatccgctgtataaaacatatcctgaaatagttggcggttcattctgctgtggcgcccCCTGtaacagagactaagccgaaggagaatgaatgaatgattggacGGTATAGCGATGCAAGTGAGGAAGGGGAGACAGGCCAGTGATGATTGACTGCACTAGCATTGAAAACACTGCACTTAATATTAGGTTGCATGTGTTTATTGGATTTGGCTGCAATTAGAATATTTCTACATTCCGATGTTTTCATTTGTGAaaggaaaatacaaaatgttcAAATGCAAAATGCCTTTTAATTATGCCGTTTGACTGGATGCATATAAAGTCATCGCATGTTTTTTAAACATTGGATTCAATGAATCTTTCTAGTGTACATGCATCATATAATTGTGTTCATGCACAGTATGAAATGGAATAGATGATAAAAGGCTGTTGCGGAATGTATACATGTAAGAAAAATTAAGCATACATTTTTAAGagtggcgacacggtggctcagaggttaatactgttgcctcacagcaagaaggtcgctggttcgagtcctggctgtgccagttggcattactgtgtggagtttgcatgttttccacgtgttcgtgtgggtttcccccacagtccaaatacatgtgccataggggaattgaataaactaaattggccgtagtgtatgtgagagtgtatggatgtttcctagtactgtgttgcggctggaagggcatccgctgtgtaaaacatatcttggatagttagcggttcattccactgtggcgatccctgataaataaagggatttagccgaaaaaaataaatgaaatcattagaaaaaatagaaatactTCAAATTAagaatttaattgtttaatttaaaaactgtggCCTATTGTCATATaggcaaaaaacaaactggccagcacgtTTAACTTTCCTCAGTTAGAATTTGGGACACTGAATTTGGCACGACGTGACTTCAGAAATGGAAATGCCAAATTCGGAATCCCAAATTCTGTAGCGACAGGAAACActggattctgcttggtcttaaaccCTATTTCGATGCGttatatttatactttattatggcgtagcagtcaaaataggaccaAGAACTTAtctatgggacaaattctggacccgtcagtgaggggtgggtctttggAACTACCCGAATCTCCCCTGGCTACAGGTCTGTTAAGTGGATTATATGCTAGAGTAGTCCAAATGTAGCTGATTTATAATTGTTTGGAACCATCTCTCAtccatttacactgtaaaaaatattgctgccttatttatttatttatttgttaacctTAAACCAAACAAATTAAACCTTAAATTAACCTTTCTAGTCATCTCAGCTTCAAACTGAttaaaaatattaggttaaacTTTGCATCACATAACAAATGTAGTTGAGGCCTgataacattaacaaaaatttAAAGTAACATATAAAAAACTTAGTCATgactttttgtaatattatttttttcagtgtaggcatCTACGGTCACAGTAGCTTGCACACATTTTTGTGTCCACTGTTATCCGCGTCTACTGGTGTACAACTTTTTATTGGTAATTTGCATTATAGGTTGTCCCTGGGGctttgttgccatcttgtggacaaataaatagaaatagaataaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagacagaaagacagaaagaaagatttAACTTGgccttttaaaaactttatttaggAATGTCCATTagtccagtgtttcccaaccctgttcccaaAGGCAAatcaacagtacacattttcaacctcttcctaatcaaacacacttgaatcaACTcgtcagaacattagaagagactccaagacctgaaatgaatgggtcagataggGAAGACGTCctaaatatgtactgttggtgtgccttcaggaacagggttgggaaaacACTGCATtagatcaaaacctttcatcaaagttttcCTAAACTATTTtgaccacttcaaatgttgactgttGTATACTGTATTTTAAGTCATTGTGAATACAGTCAGTGTATTAAATACAGGCTTTAAGTCCAGAGTTATAGACTGTCATTGCAGGGAACTTGTTGAAATTGACACAAAGCTATTGAATTGGTAATAAATGAATTGGTCTAGATCACATTCTTCTCTGTGCTCTGAAAAGGACTACGCCACACACAAGGTGAGGGCCTTTTCTTGTGTTTTGCAGCCTTTGGGGACTCCATAAAGGTGTTCATTTAAGGTGGGAATTAGGGGAAGGTGTTTCGGGGAGACAGAGGAGGAAAAGCTAGCGGGGTTGTACATGTacagtgtgtgtgcgcatatcaTAGGTGCTATCTATAGTCCATGCGTGCAGAAAAATGAGAGAAAAATACAATGTTATGTGAAAGAGCCTCAGACTGAACTGTGATGATGTGAATTGTGATTTCTCTCTTGCTTGCTCATATTTATTGAACTGAATAAATGCAAACGCAGAAACCGAGGTGTCGTGGTTCATTTTGTTGAGCTGTGGGAGGGTTTGGGGGCTCAGCATAGGTGCATCCTGCcctgtccttctgtctgtctttctgtctctgtCTTAGATGTTATATAGAATCCACATGGAAGAGAACTATTGCGATGTCTATGCTTTACGTTTGGTTTTGCGATTCTTCTATTTTGTGTGTGACAGGCTCTGGAATAAGTTCTGGCATCTTTTAGGCTGTGCATATTGGCTGTCAGCTGAGAGTTGAGAAATATATGTTTGCATCCTGAGTGAATCTGATATATTTCAGTGTCTTATATGTGCAAGGTAATAAAAGATGCAAAGTCTCCTATTCCAGGaccaaatgttgaaaatgttaacAATCCCATCCTACTTGAAAGATAGTACTTGAAGGATCAATTTGTGTTAGGTAATGATTGGCTTTAATGATGTGATTtaatgactgattgattgattgaaacttGGTTCTTTGATTTTATGCTTTGGGAGTTAAAggtgtagttcactcaaaaatcaaTGTTATTTACTGAATCTCATGTTGTTCTAAACCTATGGAAGCTTGTATTTGCcacagaataaaatatataaataaataaaaaaaataaaaacatctctgAATATAAATGTAAGTTTC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0050877 nervous system process biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0007626 locomotory behavior biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0003008 system process biological_process
GO:0007399 nervous system development biological_process
GO:0006814 sodium ion transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0043005 neuron projection cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0044297 cell body cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0150034 distal axon cellular_component
GO:0098793 presynapse cellular_component
GO:0005391 sodium molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005914 True 7655 lncRNA 0.35 1 32584417 32592071

Neighbor

gene id symbol gene type direction distance location
XLOC_002235 CR388187.1 coding upstream 188521 32395780 ~ 32395896 (+)
XLOC_002234 NA coding upstream 320119 32259743 ~ 32264298 (+)
XLOC_002233 wnt11 coding upstream 461213 32104305 ~ 32123204 (+)
XLOC_002232 si:dkey-250d21.1 coding upstream 511628 32066355 ~ 32072789 (+)
XLOC_002231 thap12a coding upstream 520012 32058692 ~ 32064405 (+)
XLOC_002238 zbtb21 coding downstream 54331 32646402 ~ 32648803 (+)
XLOC_002239 rad51c coding downstream 70815 32662886 ~ 32672508 (+)
XLOC_002240 ppm1e coding downstream 91018 32683089 ~ 32788832 (+)
XLOC_002241 CU929186.1 coding downstream 410248 33002319 ~ 33002433 (+)
XLOC_002242 myl10 coding downstream 579430 33171501 ~ 33179988 (+)
XLOC_002228 NA non-coding upstream 542571 31869282 ~ 32041846 (+)
XLOC_002229 NA non-coding upstream 635873 31946837 ~ 31948544 (+)
XLOC_002226 NA non-coding upstream 815464 31742998 ~ 31768953 (+)
XLOC_002243 NA non-coding downstream 673310 33265381 ~ 33265687 (+)
XLOC_002244 NA non-coding downstream 765025 33357096 ~ 33359026 (+)
XLOC_002245 NA non-coding downstream 768257 33360328 ~ 33368165 (+)
XLOC_002252 NA non-coding downstream 1278118 33870189 ~ 33871012 (+)

Expression


Co-expression Network