XLOC_002231 (thap12a)


Basic Information

Item Value
gene id XLOC_002231
gene name thap12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32058692 ~ 32064405 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004279
GGGACAGAGACCGACTCCAACGCGCTTCTCCTCCAGGCCACACAAAGCACTAGAGTGCCTATCAATTTACTGCTTTATTAGTCTTCAAAACTATCTTTTTTAAACTTTCTGTCCAAAATAACATCACTGTTAATCCAATGAACTAGATTCGCTTTTAAGATTCGACTCCGGGTGGACGCACGATGCCTAATTTCTGCGCGGCGCTCAACTGCTCCAGGAACAGCACTCACTCGGTGCTGGCGTTCTTCAGGTTTCCACGGGACCCGGAGAGATGTAAGAAATGGGTGGAAAACTGCAGTCGCTCAGACCTGAAAGACAAAACACCGGATCATCTGAACAAGTACCACAGACTGTGTGCCAGACACTTTGAGCCTAACTTGATAACCAAAACTagccCTTTCAGGACTGTTCTGAAGGATAGTGCTGTACCAACTATATTTGACAATCCTTTTAAGCGGTCAAATAATGAGGCAGACAAGGATGCCCCTGaagcgaagaaaaataaatCGGACTCTCAAAGTGAGGAACCTAAAGATAATAGTGAAGCCGCCACCAAAGATGTGAATGAGAACAAAAATGGCGATGGGGTTGACAGCAGCCCTCCGGTCATTGATGAAGAGACGCTGAATAAAGAGTATCTCAAGTCTCTGTTTGATGTTGTTGTGATGATGGGCACCCAGAACATTCCTCTGCACGGCCACTCTGACAAAGAACCCAGAAGCAAAAGCTTCACTCCTAGCAACTTTCAGGCTCTGCTGGAGTACCGCATCAATGCAGGTGACGAATTCCTCAGAAAGAAGTTTGAGGGGTCACCTGTAAACCTCGAGCATTGCTCCTCTACCCAGTTACAACAGATCTTAGAAGTGATTGAAAAGTGCATTCGTGAAGAGCTGTTGGCTGAAGCTAAAGAAGGACGCTGCTTCTCTTTAGTTGTAGATAACCTGGTTGAGATAGAAGGAGAAAACTATGTCCCGTTATTTGTACGTTTTGTGGACAAGGCCAACTGTCTCCGGGAAGAGTTTGTCGACTTCCTGCTCTTTGAAGGCGACGTGGAGGCCATCACAGAGAGGCTTGTGACTGAACTGACTGAGAAATGTGGCCTGGACATGAAGTATTGCAGAGGACAGGCATATTTGTGTTCTGGGGTGTCCGCTATGAAGGTCAAAGCGATGGTGGCAAAAATAGCTGAGCTGCATCCGCTCGCAGTTCTCACTCCTTGCTCCAGTTGCTCCCTAAACATCTGCCTGGCAAACACAATGACGTTCACCGGAGTGCATCTCGTCATGTCTACCCTGAAAAAGCTGGATGCATTTTTCAGCAAATCGCCCTTGTTGCAAAATCAGCTGGAAAGTGCTATTTCGATCTACTACCAGGGAAATGAAGAGAAGGCTAATGTCCTTAAGGAGGCGTGCGGCTCTAAATGGACAGAGCAACACGATACCTTTGAATTGGCGGTTGACCTCTTGGAGTCTCTCCTGCTGTGTATGGACAGCGTGCATGATAATGAAGATCACAAATGGAGCGATGAAGTGGCGCACAATGCTTTTGTCATTTCCGAGGCATTGGCTGATTTTGAATACGTCATGACATTAGTGGTGTTGAAAAACACCCTTTCCTTCACCAGAGCCTTTGGCAAGAATCTGCAAGGGGAAACCAATGAGGTCTTCTTCGCTTCTGGCAGTCTAACCGCAGTTCTGCATTCACTGAATGAAGTTTATGAGAATATCGAGGTCTACCATGAGTTCTGGTTCGAAGAGGCTGTAAATCTGGCCGCATCTCTTGAAATCCCAGTAAAAGTACCAAGGCTGTACTTCAGAAAACGACCAACGTCTGGTGAGGAAATCCAACCTGAGACCTACTACAAAGACCAAGTAACCATCCCTGTGGTCAGCCATGTGATCAAGGAGCTGTCTGACCTGTTCTCTGAAAATCATCTGAAGGCCTTGAAGTCCTTGTCTCTTGTCCCTGCCATCATGGGACAGCTGAAGTTCAACACCACAGAGGAGACCAGCGTGGACATTTACAAAGATGACCTGCTGAACCCAGACACCTTTCCTGCTGAGCTGCACTGCTGGAAGATCAAATGGAAACATGGAACCAAAGATGTGATTTTGCCATCGACCATCTACGAGACGCTTCAGCTGTCCGATGTGAAGTTCTTTCCCAACGTTTGTGCTCTACTGAAAGTTCTGTACAATCTGCCACTCTTCGCTCTGACAAATGACAAATGCAGCACTGCAAAACAGCGACTGATGGCGTACCTGCAAGATACACCTGTGAATCACAGAAACAAGAGTATGGCCCTGTTCTATATTAACTGTGCCATTAAGCATGATTTGGACAGCATGGTTGAGACCTACTTGAAAATGTATCAAGAAAGTGAGCCAACAGAGAAACAGGATTCATCACAGGAAGCAGTGCAGTCTTAAATATAGCAGTACGATGACTCTGCTAGTCAAAGAGCAGTTTGTAGTTTTCGCATCATTTTGTTATCTTTGCTTTTTATGTACAGTCATCCAAGATTACCAGGACTTTTCCTATTGTTCTACTCCCACTGTGTATATAAAAGTGGACTCCCAGTCTGAATTGATTTGAACACATTGAAAATGATCTTCTCCTGTCCAGTTccataaatgtgttgaaattgtTAAAGCTGTTTTTCAGAATTAAATACCTTTCTGATAAGGGTAAA

Function

symbol description
thap12a Predicted to enable DNA binding activity; kinase activity; and metal ion binding activity. Predicted to act upstream of or within phosphorylation. Orthologous to human THAP12 (THAP domain containing 12).

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2045 Predicted to enable DNA binding activity; kinase activity; and metal ion binding activity. Predicted to act upstream of or within phosphorylation. Orthologous to human THAP12 (THAP domain containing 12).

Ensembl:

ensembl_id ENSDARG00000042489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004279 True 2692 mRNA 0.45 5 32058692 32064405

Neighbor

gene id symbol gene type direction distance location
XLOC_002230 si:ch211-266i6.3 coding upstream 614 32050906 ~ 32058078 (+)
XLOC_002228 NA coding upstream 16846 31869282 ~ 32041846 (+)
XLOC_002229 NA coding upstream 110148 31946837 ~ 31948544 (+)
XLOC_002227 foxo1b coding upstream 197218 31809226 ~ 31861474 (+)
XLOC_002226 NA coding upstream 289739 31742998 ~ 31768953 (+)
XLOC_002232 si:dkey-250d21.1 coding downstream 1950 32066355 ~ 32072789 (+)
XLOC_002233 wnt11 coding downstream 39900 32104305 ~ 32123204 (+)
XLOC_002234 NA coding downstream 195338 32259743 ~ 32264298 (+)
XLOC_002235 CR388187.1 coding downstream 331375 32395780 ~ 32395896 (+)
XLOC_002236 map6a coding downstream 496262 32560667 ~ 32601380 (+)
XLOC_002225 BX571852.1 non-coding upstream 365916 31692662 ~ 31692776 (+)
XLOC_002219 CR925737.1 non-coding upstream 1070588 30978386 ~ 30988104 (+)
XLOC_002237 NA non-coding downstream 520012 32584417 ~ 32592071 (+)
XLOC_002241 CU929186.1 non-coding downstream 937914 33002319 ~ 33002433 (+)
XLOC_002243 NA non-coding downstream 1200976 33265381 ~ 33265687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15467093_15471138 PRKRIRA coding CI01000304 null 15467093 ~ 15471482 (+)