XLOC_002236 (map6a)


Basic Information

Item Value
gene id XLOC_002236
gene name map6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32560667 ~ 32601380 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004284
TGTACCACCATAAGCAGTTTGTCTGTGCCTAATAACCAAACTttcagttaacctaattaaactggTAAAATAACAAGTATGGCATCATATAgggttatcatggcaaagacaataaataaatactcttcAAAAATTCTTCAGAAAATGACATTGTTCAGAATAACAAATACTTCCTACTTTTGAAATCAAATAATCACACACAACTTGGGATTTCATATTATATGGGAACTTCATACAgacataatgatttttatacagTAGACTAGGCCTGCTCTGTCCTTTTACCCCAACTCTCACTGAATTTTtacaaaatacttaattctgtatgatttatgaGTTCCTTTTTCCCATTGGGACAAAAAAATTTATCACAAAGTCAAAACTTTccaatgccacacacacacacgcgcacgcacgcttAAATACATATGCAGAGTACAACGCTTTGAACTATTTTTGGAACATCTCTCCCTCACATCATTTGTCCACAAGGACTCTATCTTCTGTATTaggcgtgtgcgtgcgtgcgtgcgagtgtgtttgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgttggCCCCGCCCACTGCAGACGCTGCGTGATGATGCGCGCGGCAGGTGATTCAGCTCCTCTGGATGGATGATGCTGAGCGGAGGAGGCGCGCAGGAGGGGCTGCTGGATCTTCACTAAATCTCGCGCTGTAACGAGCGCAAGAGGAGCAAAACCGGAACATTTCCCTGGCTAACAAAACACCCAAAACCCCGTTATGCCTCCTATACGGTGGATTTGTGTCCTGTCATCTTTGATAGCATCGTTTTGAGGGGAAATAAACCGTGCGAATCGGACATCTTGTATTTCTCGGCTCGCGAGCGCGCTTAGTCCTACAAACTGAATATAAAACGGCTTCTGGGAAGGGACGAGGTTGGAATAAGTGAAGACGTCGCCAAAACCACCATGGCTTGGCCCTGTATCTCCAGAGCCTGCTGCATGGCTCGGTTCTGGAGCCAGCTGGACAAGGCCGACATTGCGGTGCCGTTGGTTTTCACCAAATACTCAGACGTGTCCGAAATGCAGCATCTCCACCTGCAGCAGCCCGTGCAGAAGATCGCGATTGAAACACAGCCGCTTCATCATGATCACGAGCCGGTGACCAGAGCACCTCATGCCGGCCACGACGAGCACTCCTTCGGCTCTGTGATGCGCCAGGACTTTAAACACTGGAAAGTTCGTCCGGAGCCCAGCTGCAAGCCCAAGAACGAGTACCACGGCCCTGAGATCCCCTTTAACACCGAGACCCAGTATCAGAAGGACTACAAGCCCTGGCCTATCCCAAAGAAGGGAGATCACCCATGGATACCCAAACCCTCTCCAAGCATCTCAGCGGGCAAACACAGCAGCCCGGAGATGATGATGGACAGTGGCGTGGAGAAGAGTGAGATTGCTGATAAGGTGCCAGAGAAGGAGATTCTGTCCAGTGAAAGGAAAAAGAGGCAGGTGAAGAAAGTGGCAGTGGTTTCTGAAAACAACGCAGGGGTGAAGTTGGATAGGGATGCCAGCGCTGTGGAGGGGAAAGGAAGGGCGGCTGTGGATGCCCTCAATCGGCAGATCAAACGAGAAGTCTCCTCTGGAAGCTCCTACAGGACTGAGTTCAAAGCCTACACAGACGTGAAACCTGTGAAACTCATCAGGGCCAAGTCTCAATATAAGCCTCCCGATGATAAGACTGACCTGGAGaccagttacagcgccacctacaGGGCCTAccagtctagtcagcagccagACGACAACAAGGCCCTGGAGAGGAGGAGGATACGCACACTGTACCACGAGCCTTACAGAGAGAGCAGTAAGGTGGAGAAAACCAGTCTTCCTCGCTCTAAACCGAAAAAGAGCTCCTCCACATCCGCCACACCCGGGAAACCTCTGAAAAAGTCCAAGGAGAAGCAGGCGACGTCGGTGCGCGGCTCCAAGAAGAAGAGCTCCGAGAACCAGCCGGAGAGCAGAGCGGTGCAGGCGGACAAGGAGAAAAGTAAAGAGATCAACAACAAACTGGCTGAGGCGAAAGAGTAA
>TCONS_00004285
CTGAGCGGAGGAGGCGCGCAGGAGGGGCTGCTGGATCTTCACTAAATCTCGCGCTGTAACGAGCGCAAGAGGAGCAAAACCGGAACATTTCCCTGGCTAACAAAACACCCAAAACCCCGTTATGCCTCCTATACGGTGGATTTGTGTCCTGTCATCTTTGATAGCATCGTTTTGAGGGGAAATAAACCGTGCGAATCGGACATCTTGTATTTCTCGGCTCGCGAGCGCGCTTAGTCCTACAAACTGAATATAAAACGGCTTCTGGGAAGGGACGAGGTTGGAATAAGTGAAGACGTCGCCAAAACCACCATGGCTTGGCCCTGTATCTCCAGAGCCTGCTGCATGGCTCGGTTCTGGAGCCAGCTGGACAAGGCCGACATTGCGGTGCCGTTGGTTTTCACCAAATACTCAGACGTGTCCGAAATGCAGCATCTCCACCTGCAGCAGCCCGTGCAGAAGATCGCGATTGAAACACAGCCGCTTCATCATGATCACGAGCCGGTGACCAGAGCACCTCATGCCGGCCACGACGAGCACTCCTTCGGCTCTGTGATGCGCCAGGACTTTAAACACTGGAAAGTTCGTCCGGAGCCCAGCTGCAAGCCCAAGAACGAGTACCACGGCCCTGAGATCCCCTTTAACACCGAGACCCAGTATCAGAAGGACTACAAGCCCTGGCCTATCCCAAAGAAGGGAGATCACCCATGGATACCCAAACCCTCTCCAAGCATCTCAGCGGGCAAACACAGCAGCCCGGAGATGATGATGGACAGTGGCGTGGAGAAGAGTGAGATTGCTGATAAGGTGCCAGAGAAGGAGATTCTGTCCAGTGAAAGGAAAAAGAGGCAGGTGAAGAAAGTGGCAGTGGTTTCTGAAAACAACGCAGGGGTGAAGTTGGATAGGGATGCCAGCGCTGTGGAGGGGAAAGGAAGGGCGGCTGTGGATGCCCTCAATCGGCAGATCAAACGAGAAGTCTCCTCTGGAAGCTCCTACAGGACTGAGTTCAAAGCCTACACAGACGTGAAACCTGTGAAACTCATCAGGGCCAAGTCTCAATATAAGCCTCCCGATGATAAGACTGACCTGGAGaccagttacagcgccacctacaGGGCCTAccagtctagtcagcagccagACGACAACAAGGCCCTGGAGAGGAGGAGGATACGCACACTGTACCACGAGCCTTACAGAGAGAGCAGTAAGGTGGAGAAAACCAGTCTTCCTCGCTCTAAACCGAAAAAGAGCTCCTCCACATCCGCCACACCCGGGAAACCTCTGAAAAAGTCCAAGGAGAAGCAGGCGACGTCGGTGCGCGGCTCCAAGAAGAAGAGCTCCGAGAACCAGCCGGAGAGCAGAGCGGTGCAGGCGGACAAGGAGAAAAGTAAAGAGATCAACAACAAACTGGCTGAGGCGAAAGAGGTTATGCTAAAACAGTACCACTACATTCAGCTCTGTCAGCCCATCCGCGATATTGGTTGGGTGCAGACACTAAAGCAACACCTGTGGCGCTGTGCACTGCCCGACCCAAGAGAATGTGAGTCTGGCGTCGGACGAGTCAGCGATTATTATTCCGCGGGTACCTCTGGAGGAGAACCACTGGTGGAACGACCAGAACCACGGAGTCGGGGAGTAGTTCGCTTCGCTCCGGACGTCAAGTActgacaccaaaaaaaaaaagcacaccaGACAGACCAGGGCAGGCAGCTATAGACGACAACAATGAAGTCATATTTTAGGACATATTTTTGCAGACTGAGAGAAATGTGTGGAGTTTAAACAAAGTACTGTATGTGTAAATATCTATATAGATGTCATAGATTATTATGACTGAATTCTGAGCTTCCCGAATGAGACGAACACCCATGAATGAAAAGTACCTGCGCTCCCAGACTGTTTGCAACCACTGAAATGGtgctataaatgtattttttgtttcatgCTCTTTCTCCAAACAAACAATGTTGCCATGATGATCATATAGAGTAGCAAATATCATGTCAGTAAGTGCTTCCTTAAAGTATAACAAACTGTTTGAAAGTCTAATAAATGTGATCAAATTACT

Function

symbol description
map6a Predicted to enable microtubule binding activity. Predicted to be involved in cytoskeleton-dependent intracellular transport and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in Golgi-associated vesicle; cis-Golgi network; and microtubule. Is expressed in nervous system; neural tube; somite; and trigeminal placode. Orthologous to human MAP6 (microtubule associated protein 6).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0030705 cytoskeleton-dependent intracellular transport biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005798 Golgi-associated vesicle cellular_component
GO:0005801 cis-Golgi network cellular_component
GO:0005874 microtubule cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-42 Predicted to enable microtubule binding activity. Predicted to be involved in cytoskeleton-dependent intracellular transport and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in Golgi-associated vesicle; cis-Golgi network; and microtubule. Is expressed in nervous system; neural tube; somite; and trigeminal placode. Orthologous to human MAP6 (microtubule associated protein 6).

Ensembl:

ensembl_id ENSDARG00000074521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004284 False 2078 mRNA 0.50 3 32560667 32581374
TCONS_00004285 True 2068 mRNA 0.51 5 32561317 32601380

Neighbor

gene id symbol gene type direction distance location
XLOC_002235 CR388187.1 coding upstream 164771 32395780 ~ 32395896 (+)
XLOC_002234 NA coding upstream 296369 32259743 ~ 32264298 (+)
XLOC_002233 wnt11 coding upstream 437463 32104305 ~ 32123204 (+)
XLOC_002232 si:dkey-250d21.1 coding upstream 487878 32066355 ~ 32072789 (+)
XLOC_002231 thap12a coding upstream 496262 32058692 ~ 32064405 (+)
XLOC_002238 zbtb21 coding downstream 45022 32646402 ~ 32648803 (+)
XLOC_002239 rad51c coding downstream 61506 32662886 ~ 32672508 (+)
XLOC_002240 ppm1e coding downstream 81709 32683089 ~ 32788832 (+)
XLOC_002241 CU929186.1 coding downstream 400939 33002319 ~ 33002433 (+)
XLOC_002242 myl10 coding downstream 570121 33171501 ~ 33179988 (+)
XLOC_002228 NA non-coding upstream 518821 31869282 ~ 32041846 (+)
XLOC_002229 NA non-coding upstream 612123 31946837 ~ 31948544 (+)
XLOC_002226 NA non-coding upstream 791714 31742998 ~ 31768953 (+)
XLOC_002243 NA non-coding downstream 664001 33265381 ~ 33265687 (+)
XLOC_002244 NA non-coding downstream 755716 33357096 ~ 33359026 (+)
XLOC_002245 NA non-coding downstream 758948 33360328 ~ 33368165 (+)
XLOC_002252 NA non-coding downstream 1268809 33870189 ~ 33871012 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15723867_15741978 NA coding CI01000304 null 15723867 ~ 15742863 (+)