RNA id: TCONS_00004284


Basic Information

Item Value
RNA id TCONS_00004284
length 2078
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_002236
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32560667 ~ 32601380 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTACCACCATAAGCAGTTTGTCTGTGCCTAATAACCAAACTttcagttaacctaattaaactggTAAAATAACAAGTATGGCATCATATAgggttatcatggcaaagacaataaataaatactcttcAAAAATTCTTCAGAAAATGACATTGTTCAGAATAACAAATACTTCCTACTTTTGAAATCAAATAATCACACACAACTTGGGATTTCATATTATATGGGAACTTCATACAgacataatgatttttatacagTAGACTAGGCCTGCTCTGTCCTTTTACCCCAACTCTCACTGAATTTTtacaaaatacttaattctgtatgatttatgaGTTCCTTTTTCCCATTGGGACAAAAAAATTTATCACAAAGTCAAAACTTTccaatgccacacacacacacgcgcacgcacgcttAAATACATATGCAGAGTACAACGCTTTGAACTATTTTTGGAACATCTCTCCCTCACATCATTTGTCCACAAGGACTCTATCTTCTGTATTaggcgtgtgcgtgcgtgcgtgcgagtgtgtttgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgttggCCCCGCCCACTGCAGACGCTGCGTGATGATGCGCGCGGCAGGTGATTCAGCTCCTCTGGATGGATGATGCTGAGCGGAGGAGGCGCGCAGGAGGGGCTGCTGGATCTTCACTAAATCTCGCGCTGTAACGAGCGCAAGAGGAGCAAAACCGGAACATTTCCCTGGCTAACAAAACACCCAAAACCCCGTTATGCCTCCTATACGGTGGATTTGTGTCCTGTCATCTTTGATAGCATCGTTTTGAGGGGAAATAAACCGTGCGAATCGGACATCTTGTATTTCTCGGCTCGCGAGCGCGCTTAGTCCTACAAACTGAATATAAAACGGCTTCTGGGAAGGGACGAGGTTGGAATAAGTGAAGACGTCGCCAAAACCACCATGGCTTGGCCCTGTATCTCCAGAGCCTGCTGCATGGCTCGGTTCTGGAGCCAGCTGGACAAGGCCGACATTGCGGTGCCGTTGGTTTTCACCAAATACTCAGACGTGTCCGAAATGCAGCATCTCCACCTGCAGCAGCCCGTGCAGAAGATCGCGATTGAAACACAGCCGCTTCATCATGATCACGAGCCGGTGACCAGAGCACCTCATGCCGGCCACGACGAGCACTCCTTCGGCTCTGTGATGCGCCAGGACTTTAAACACTGGAAAGTTCGTCCGGAGCCCAGCTGCAAGCCCAAGAACGAGTACCACGGCCCTGAGATCCCCTTTAACACCGAGACCCAGTATCAGAAGGACTACAAGCCCTGGCCTATCCCAAAGAAGGGAGATCACCCATGGATACCCAAACCCTCTCCAAGCATCTCAGCGGGCAAACACAGCAGCCCGGAGATGATGATGGACAGTGGCGTGGAGAAGAGTGAGATTGCTGATAAGGTGCCAGAGAAGGAGATTCTGTCCAGTGAAAGGAAAAAGAGGCAGGTGAAGAAAGTGGCAGTGGTTTCTGAAAACAACGCAGGGGTGAAGTTGGATAGGGATGCCAGCGCTGTGGAGGGGAAAGGAAGGGCGGCTGTGGATGCCCTCAATCGGCAGATCAAACGAGAAGTCTCCTCTGGAAGCTCCTACAGGACTGAGTTCAAAGCCTACACAGACGTGAAACCTGTGAAACTCATCAGGGCCAAGTCTCAATATAAGCCTCCCGATGATAAGACTGACCTGGAGaccagttacagcgccacctacaGGGCCTAccagtctagtcagcagccagACGACAACAAGGCCCTGGAGAGGAGGAGGATACGCACACTGTACCACGAGCCTTACAGAGAGAGCAGTAAGGTGGAGAAAACCAGTCTTCCTCGCTCTAAACCGAAAAAGAGCTCCTCCACATCCGCCACACCCGGGAAACCTCTGAAAAAGTCCAAGGAGAAGCAGGCGACGTCGGTGCGCGGCTCCAAGAAGAAGAGCTCCGAGAACCAGCCGGAGAGCAGAGCGGTGCAGGCGGACAAGGAGAAAAGTAAAGAGATCAACAACAAACTGGCTGAGGCGAAAGAGTAA

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0030705 cytoskeleton-dependent intracellular transport biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005798 Golgi-associated vesicle cellular_component
GO:0005801 cis-Golgi network cellular_component
GO:0005874 microtubule cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-42 Predicted to enable microtubule binding activity. Predicted to be involved in cytoskeleton-dependent intracellular transport and regulation of microtubule cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in Golgi-associated vesicle; cis-Golgi network; and microtubule. Is expressed in nervous system; neural tube; somite; and trigeminal placode. Orthologous to human MAP6 (microtubule associated protein 6).

Ensembl:

ensembl_id ENSDART00000182278

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005913 lncRNA upstream 296369 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005912 lncRNA upstream 612123 31946837 ~ 31948544 (+) True XLOC_002229
TCONS_00005720 lncRNA upstream 618491 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005719 lncRNA upstream 791714 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00004263 lncRNA upstream 1572563 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005914 lncRNA downstream 3043 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00005915 lncRNA downstream 684007 33265381 ~ 33265687 (+) True XLOC_002243
TCONS_00005721 lncRNA downstream 775722 33357096 ~ 33359026 (+) False XLOC_002244
TCONS_00005722 lncRNA downstream 776470 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00005723 lncRNA downstream 778954 33360328 ~ 33362580 (+) False XLOC_002245
TCONS_00004282 mRNA upstream 437463 32104305 ~ 32123204 (+) True XLOC_002233
TCONS_00004281 mRNA upstream 487878 32066537 ~ 32072789 (+) True XLOC_002232
TCONS_00004280 mRNA upstream 487885 32066355 ~ 32072782 (+) False XLOC_002232
TCONS_00004279 mRNA upstream 496262 32058692 ~ 32064405 (+) True XLOC_002231
TCONS_00004278 mRNA upstream 502589 32050906 ~ 32058078 (+) True XLOC_002230
TCONS_00004286 mRNA downstream 65028 32646402 ~ 32648803 (+) True XLOC_002238
TCONS_00004287 mRNA downstream 81512 32662886 ~ 32672319 (+) False XLOC_002239
TCONS_00004288 mRNA downstream 81806 32663180 ~ 32672508 (+) True XLOC_002239
TCONS_00004289 mRNA downstream 101715 32683089 ~ 32788832 (+) True XLOC_002240
TCONS_00004291 mRNA downstream 590127 33171501 ~ 33179988 (+) True XLOC_002242
TCONS_00004283 other upstream 164771 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004273 other upstream 867891 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 1800623 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 1824399 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004255 other upstream 2648971 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004290 other downstream 420945 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004303 other downstream 1121068 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 1454315 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 1465986 34047360 ~ 34058765 (+) False XLOC_002256
TCONS_00004316 other downstream 1486505 34067879 ~ 34086349 (+) False XLOC_002256

Expression Profile

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