RNA id: TCONS_00004286


Basic Information

Item Value
RNA id TCONS_00004286
length 491
RNA type mRNA
GC content 0.51
exon number 2
gene id XLOC_002238
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32646402 ~ 32648803 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATACAAGATGGATGGAATCACGACTGCTTCATGCTCAACGCAACTCTGAAACAAAGTCCAGTGTCGGAGCTCCGCGGCGCCCAAAGCCACCCAGGCAGGCCAAAATGGAAAGCCTGGGGCACTACTGTAACCCAGCCCATGGTATTTCACTGCTGGGTTCCCTCAACGAGCAGCGCTTGAAAGGCCAGCTCTGTGATGTTGTGTTGTTAGTGGGTGATCAACAGTACCAGGCCCATAAAAGCATCCTTGCAGCCTGCAGTGAGTATTTCCAGTCTGTGTTCTCCAGAAGGGACTCGGAGAACCGCTCCATTGTTCAGCTTGACTTCTGTGAGCCCGATGCTTTTGAGATTGTGCTAAACTACATCTACTCCTCGTCTCTGTTTGTGGAGAAATGTAGCCTGGCGGCCATACAGGAGCTGGGATACAGCCTCGGCATTCCTTTTCTAACCAACATCATGTCTGTAAGACCTCAGGCTTCATACTGCGTGT

Function

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-050411-7 Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human ZBTB21 (zinc finger and BTB domain containing 21).

Ensembl:

ensembl_id ENSDART00000137244

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005914 lncRNA upstream 54331 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00005913 lncRNA upstream 382104 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005912 lncRNA upstream 697858 31946837 ~ 31948544 (+) True XLOC_002229
TCONS_00005720 lncRNA upstream 704226 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005719 lncRNA upstream 877449 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00005915 lncRNA downstream 616578 33265381 ~ 33265687 (+) True XLOC_002243
TCONS_00005721 lncRNA downstream 708293 33357096 ~ 33359026 (+) False XLOC_002244
TCONS_00005722 lncRNA downstream 709041 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00005723 lncRNA downstream 711525 33360328 ~ 33362580 (+) False XLOC_002245
TCONS_00004292 lncRNA downstream 712217 33361020 ~ 33362580 (+) False XLOC_002245
TCONS_00004285 mRNA upstream 45022 32561317 ~ 32601380 (+) True XLOC_002236
TCONS_00004284 mRNA upstream 65028 32560667 ~ 32581374 (+) False XLOC_002236
TCONS_00004282 mRNA upstream 523198 32104305 ~ 32123204 (+) True XLOC_002233
TCONS_00004281 mRNA upstream 573613 32066537 ~ 32072789 (+) True XLOC_002232
TCONS_00004280 mRNA upstream 573620 32066355 ~ 32072782 (+) False XLOC_002232
TCONS_00004287 mRNA downstream 14083 32662886 ~ 32672319 (+) False XLOC_002239
TCONS_00004288 mRNA downstream 14377 32663180 ~ 32672508 (+) True XLOC_002239
TCONS_00004289 mRNA downstream 34286 32683089 ~ 32788832 (+) True XLOC_002240
TCONS_00004291 mRNA downstream 522698 33171501 ~ 33179988 (+) True XLOC_002242
TCONS_00004294 mRNA downstream 734055 33382858 ~ 33394568 (+) False XLOC_002246
TCONS_00004283 other upstream 250506 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004273 other upstream 953626 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 1886358 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 1910134 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004255 other upstream 2734706 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004290 other downstream 353516 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004303 other downstream 1053639 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 1386886 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 1398557 34047360 ~ 34058765 (+) False XLOC_002256
TCONS_00004316 other downstream 1419076 34067879 ~ 34086349 (+) False XLOC_002256

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15776859_15777750.mRNA True 600 mRNA 0.49 2 CI01000304 15776859 ~ 15777768 (+)