RNA id: TCONS_00004255


Basic Information

Item Value
RNA id TCONS_00004255
length 181
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_002215
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29893626 ~ 29911696 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgccctgccttcatcttcaggcagtaTTTGCCAGCTCTTCACGAGACCTGCATCATCAACAGTATTTAGGCCAAAGGACTAAACACAAAGGGCTGAGCAATCTGTCTGAAACGTGTCATTAAATAATGACATATCTGCAGGGACAGAGTTACAAGAAAGCTGACCAAAAATCTTCAGTACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000135900

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005908 lncRNA upstream 3600 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA upstream 3600 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00004241 lncRNA upstream 124718 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005718 lncRNA upstream 819021 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00005907 lncRNA upstream 1455537 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00004260 lncRNA downstream 586385 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00004263 lncRNA downstream 1066690 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005911 lncRNA downstream 1066856 30978552 ~ 30988075 (+) True XLOC_002219
TCONS_00005719 lncRNA downstream 1831302 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00005720 lncRNA downstream 1957586 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00004253 mRNA upstream 22758 29855213 ~ 29887864 (+) False XLOC_002211
TCONS_00004252 mRNA upstream 22758 29855213 ~ 29887864 (+) False XLOC_002211
TCONS_00004254 mRNA upstream 39962 29855281 ~ 29870660 (+) True XLOC_002211
TCONS_00004246 mRNA upstream 52604 29849977 ~ 29858018 (+) False XLOC_002211
TCONS_00004244 mRNA upstream 56794 29849497 ~ 29853828 (+) False XLOC_002211
TCONS_00004256 mRNA downstream 51822 29963518 ~ 30576089 (+) False XLOC_002216
TCONS_00004257 mRNA downstream 51920 29963616 ~ 30579384 (+) False XLOC_002216
TCONS_00004259 mRNA downstream 51990 29963686 ~ 30589172 (+) False XLOC_002216
TCONS_00004258 mRNA downstream 51990 29963686 ~ 30589172 (+) False XLOC_002216
TCONS_00004264 mRNA downstream 1310737 31222433 ~ 31229732 (+) False XLOC_002220
TCONS_00004250 other upstream 58380 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004249 other upstream 59527 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004248 other upstream 59955 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004237 other upstream 437166 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004235 other upstream 577447 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004261 other downstream 824452 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004262 other downstream 848233 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004273 other downstream 1780966 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004283 other downstream 2484084 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004290 other downstream 3090623 33002319 ~ 33002433 (+) True XLOC_002241