Fish Transcriptome and Expression Database

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model fish

XLOC_002205 (FP102896.1)

Basic Information

Item	Value
gene id	XLOC_002205
gene name	FP102896.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	29333059 ~ 29333175 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004235
GGCCACAgctatatcaccctgcagcccaagacccgTTACTCACTgatgctaagcagggctgagcctggtcattaCCTAGATGGGATACCCcatgagaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116938

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00004235	True	117	rRNA	0.52	1	29333059	29333175

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002204	crebzf	coding	upstream	64336	29265463 ~ 29268723 (+)
XLOC_002203	sytl2a	coding	upstream	69036	29259882 ~ 29264023 (+)
XLOC_002202	picalma	coding	upstream	107894	29137482 ~ 29225165 (+)
XLOC_002201	NA	coding	upstream	241458	29091237 ~ 29091601 (+)
XLOC_002200	cblb	coding	upstream	600057	28587446 ~ 28733002 (+)
XLOC_002206	dlg2	coding	downstream	98354	29431529 ~ 29705509 (+)
XLOC_002207	BX470178.1	coding	downstream	140167	29473342 ~ 29473456 (+)
XLOC_002208	hyou1	coding	downstream	436945	29770120 ~ 29791466 (+)
XLOC_002209	h2ax1	coding	downstream	483506	29816681 ~ 29817589 (+)
XLOC_002210	BX120005.2	coding	downstream	507550	29840725 ~ 29848513 (+)
XLOC_002199	NA	non-coding	upstream	877974	28442909 ~ 28455085 (+)
XLOC_002196	CU207388.1	non-coding	upstream	1080264	28252678 ~ 28252795 (+)
XLOC_002195	NA	non-coding	upstream	1086639	28203764 ~ 28246420 (+)
XLOC_002193	NA	non-coding	upstream	2134077	27169126 ~ 27198982 (+)
XLOC_002212	BX120005.5	non-coding	downstream	517397	29850572 ~ 29850667 (+)
XLOC_002213	BX120005.4	non-coding	downstream	517825	29851000 ~ 29851095 (+)
XLOC_002214	BX120005.1	non-coding	downstream	518972	29852147 ~ 29852242 (+)
XLOC_002215	NA	non-coding	downstream	560451	29893626 ~ 29911696 (+)

Expression

Co-expression Network