XLOC_002204 (crebzf)


Basic Information

Item Value
gene id XLOC_002204
gene name crebzf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29265463 ~ 29268723 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004232
GAGTCGCCATTTTAGTTTATCTCAGTGTCGTTGCGAGCGCGTTTCTCCTACATTGGCTCGACAACGgctgaagttaaaacatttttatgtcTTGTTAAATCGGTTTATTCGCATTTTTTCAAGACCAGTCGACACTTAAAGACATCAGTGTACAATTTAAGTGTTCTCAATATCCTGAAACACGAACATGATCACCAGAAAAAGAGGAAGAAGCAGCATTAACACAAATACCACATGTTCAAGCACTTCCCATGAGACTGTTGACGCTTCAAAAACCAGTAGTGCAAGTGAAACAAACACGCACACCTCTCCAGAAAGCGACACCAACGATTGGGGCTTGGATGATCTGCTTGGCTCCGAGTTCAACTGGGACCTGGACAAGGATATGCTTGAAGCTTTCAGCAGCTTTGAATCGCAGACATCAGTCTACAATGAAACAATCCAAAGTGCAGAGCTTGATGTTTCCGCATCACGTATGGTCCAGAGGTCAAAACTACTAGACGTCTCCGGCCGGATCATCAACAAGAACGCCATAGCTGCAAGGATAAACCGATTAAAGAAGAAAGAATACGTCAGTGGCTTGGAGCAGAGAGTTGGCTCTTTGACTACAGAAAACCGCGTGCTCAAGCAGGAAAACGGAAATCTCAACAAGAGAGTGGAAGAGTTGGAGAATGAAACTAGGTACTTGAGAGCCGTGTTGGCTAATGAGAGCATGCTGGCTCAGCTGTTGTCTAGATTGAGCGGTGTGAACGGCATGAAATTTTCTACCTCGCTTTTCCAGGAACCCAATGAGAACGACCACGATTATGCCATGCCGATGAAGAGGGTGAAGGTGGAAGACAAAGAAACTGCAGGTGGCGTCTGCCTGCATGTGGACAAAGACCATGTCTCGGTGGAATTCTGCACCAAGTGTGCAGAGAGTTCAAGCTTGTCACATAAAATGTAGGGTCAAGTATTTTACCTTTTCACCGTTTCCAAGACTGAACTTTACACAAGATGTAAATGAGGGGACATGACGACAGTAGTCGTCAAAGATAGTTAACTGTTTAAATATGCAGAGCTTGAATAGCATGTCTGTTGAACTTGCTTTCAATACAAGTTACTGCTAAACTTGTTGACAGTTTTCTTCTAGGTGCTTGGTCCGCCCATGCTGAACGACCGGGTCACAGAACATCCATGACTGCTGAAATCCATGGTAAGGATCAAGATATTGAAGACTGCACAGAACTGGTTAACTCCTAAGATGAAGACAGTGCTTTTTGCCAGTTCACGGCACAATATCAACTGTAAATAAGcttaaatttagcttttttttttttcatttgttttgtttagatttatttacagaaagagaaaaaaaacattgttttgagtTGTATACATGGATGTTTATTGGAATACACAATCATATTATGTAATTGCAGATAAAATAGACAGGGAattaagtgaataaaaaaaaagtataaaatataagtTGGTGATGTTTCACAAAGGGCTTTCATCTATAATATTAACAACATACCCATTCAGCGGTCATGTGTAAAAGTTGATTTCAACAAGTTCTTTAATTTTGCCATAAACATTTGAGCCCTTTCTGAAATATCACTGTTTTTCTAAAGAATGTTTTTCATGTAGAACCCTTATTTTTCTTTATGCTAAAGTGGATTTtgctgtgggggaaaacagaagAGTCGGGACCTGCAGCTTGCATCATGGCCTGGTAAATTTAAGAAAGGTAGTACATGAAAGTGTAAGTTACTGCTTTTACTGACTCTTATCACACCCCTAAAGATGTCAGATGCTGATGTATTCATTTAGCATCTAAATGAGTAttgaaaaagtcttgttttaatGTATGGTAACAAGACATTGAACGACTATGTTAAATCCATGTGTTTCATTTTGATTTAACTTTTTGGGGTGTTTTCTATAAGTTGCCCTGATTCGAGTTAAAGAAATGGCATGTTCTTGAAGGGTTATGGTTTCTTAATAATGCTCATCTATATGTTATATGTATTAAAATTCCAAAGACTATGCAGGCACATGGCTGCATCTgttctgaaaaaaaatgtaataaattttcaTTTGATAAATGCAAATTGCTTTGTGTCCTCTTAAGATATTAACTACACTCTCCTTCTCTTTTTAGACAGCAATTTCTTCGCTCTCTACAAGAGCCTTTTCTTGCCTCTGCAAGGTGGATAAAGAGTGGTGGTGGTTTCTCCCAGATATATTCAAGTGTATACTGCACAATTCCTTAATGGTACTGGTAATTCAgtaacctcaaaaaaaaaaaaaaaaaaaaaaagtacacctATTCTGCTTGGGTTCTTAATGTCCCAGTTTATGGCTGTGACTCTAGCAATGCAGATCAACCCAAGCTGTTCTGAAATGTATAACTATGCAGTCTAAATTGTTTTGTTCCTGTCCAGTACTTCATACTGGTGTCAGTGTAAATGGGCGGAAAAGACTTTCCAAAAGTCTCTTATGAACTATTGGGTCAATGCTGTTAATgtctgtgaaatcaaaatttacaatgtttagttTGCAAGTGCACTTTGGTTAATAATTGGTTTAAGTTAAtcccttaaaataaaaatgtttgttttggt
>TCONS_00004233
AGTGCAAGTGAAACAAACACGCACACCTCTCCAGAAAGCGACACCAACGATTGGGGCTTGGATGATCTGCTTGGCTCCGAGTTCAACTGGGACCTGGACAAGGATATGCTTGAAGCTTTCAGCAGCTTTGAATCGCAGACATCAGTCTACAATGAAACAATCCAAAGTGCAGAGCTTGATGTTTCCGCATCACGTATGGTCCAGAGGTCAAAACTACTAGACGTCTCCGGCCGGATCATCAACAAGAACGCCATAGCTGCAAGGATAAACCGATTAAAGAAGAAAGAATACGTCAGTGGCTTGGAGCAGAGAGTTGGCTCTTTGACTACAGAAAACCGCGTGCTCAAGCAGGAAAACGGAAATCTCAACAAGAGAGTGGAAGAGTTGGAGAATGAAACTAGGTACTTGAGAGCCGTGTTGGCTAATGAGAGCATGCTGGCTCAGCTGTTGTCTAGATTGAGCGGTGTGAACGGCATGAAATTTTCTACCTCGCTTTTCCAGGAACCCAATGAGAACGACCACGATTATGCCATGCCGATGAAGAGGGTGAAGGTGGAAGACAAAGAAACTGCAGGTGGCGTCTGCCTGCATGTGGACAAAGACCATGTCTCGGTGGAATTCTGCACCAAGTGTGCAGAGAGTTCAAGCTTGTCACATAAAATGTGCTTGGTCCGCCCATGCTGAACGACCGGGTCACAGAACATCCATGACTGCTGAAATCCATGGTAAGGATCAAGATATTGAAGACTGCACAGAACTGGTTAACTCCTAAGATGAAGACAGTGCTTTTTGCCAGTTCACGGCACAATATCAACTGTAAATAAGcttaaatttagcttttttttttttcatttgttttgtttagatttatttacag
>TCONS_00004234
AGGTACTTGAGAGCCGTGTTGGCTAATGAGAGCATGCTGGCTCAGCTGTTGTCTAGATTGAGCGGTGTGAACGGCATGAAATTTTCTACCTCGCTTTTCCAGGAACCCAATGAGAACGACCACGATTATGCCATGCCGATGAAGAGGGTGAAGGTGGAAGACAAAGAAACTGCAGGTGGCGTCTGCCTGCATGTGGACAAAGACCATGTCTCGGTGGAATTCTGCACCAAGTGTGCAGAGAGTTCAAGCTTGTCACATAAAATGTAGGGTCAAGTATTTTACCTTTTCACCGTTTCCAAGACTGAACTTTACACAAGATGTAAATGAGGGGACATGACGACAGTAGTCGTCAAAGATAGTTAACTGTTTAAATATGCAGAGCTTGAATAGCATGTCTGTTGAACTTGCTTTCAATACAAGTTACTGCTAAACTTGTTGACAGTTTTCTTCTAGGTGCTTGGTCCGCCCATGCTGAACGACCGGGTCACAGAACATCCATGACTGCTGAAATCCATGTGGATTTtgctgtgggggaaaacagaagAGTCGGGACCTGCAGCTTGCATCATGGCCTGGTAAATTTAAGAAAGGTAGTACATGAAAGTGTAAGTTACTGCTTTTACTGACTCTTATCACACCCCTAAAGATGTCAGATGCTGATGTATTCATTTAGCATCTAAATGAGTAttgaaaaagtcttgttttaatGTATGGTAACAAGACATTGAACGACTATGTTAAATCCATGTGTTTCATTTTGATTTAACTTTTTGGGGTGTTTTCTATAAGTTGCCCTGATTCGAGTTAAAGAAATGGCATGTTCTTGAAGGGTTATGGTTTCTTAATAATGCTCATCTATATGTTATATGTATTAAAATTCCAAAGACTATGCAGGCACATGGCTGCATCTgttctgaaaaaaaatgtaataaattttcaTTTGATAAATGCAAATTGCTTTGTGTCCTCTTAAGATATTAACTACACTCTCCTTCTCTTTTTAGACAGCAATTTCTTCGCTCTCTACAAGAGCCTTTTCTTGCCTCTGCAAGGTGGATAAAGAGTGGTGGTGGTTTCTCCCAGATATATTCAAGTGTATACTGCACAATTCCTTAATGGTACTGGTAATTCAgtaacctcaaaaaaaaaaaaaaaaa

Function

symbol description
crebzf Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CREBZF (CREB/ATF bZIP transcription factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-8015 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CREBZF (CREB/ATF bZIP transcription factor).

Ensembl:

ensembl_id ENSDARG00000089787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004232 False 2612 mRNA 0.38 2 29265463 29268723
TCONS_00004233 False 877 mRNA 0.46 2 29266392 29267458
TCONS_00004234 True 1157 nonsense_mediated_decay 0.39 2 29266791 29268413

Neighbor

gene id symbol gene type direction distance location
XLOC_002203 sytl2a coding upstream 1440 29259882 ~ 29264023 (+)
XLOC_002202 picalma coding upstream 40298 29137482 ~ 29225165 (+)
XLOC_002201 NA coding upstream 173862 29091237 ~ 29091601 (+)
XLOC_002200 cblb coding upstream 532461 28587446 ~ 28733002 (+)
XLOC_002199 NA coding upstream 810378 28442909 ~ 28455085 (+)
XLOC_002205 FP102896.1 coding downstream 64336 29333059 ~ 29333175 (+)
XLOC_002206 dlg2 coding downstream 162806 29431529 ~ 29705509 (+)
XLOC_002207 BX470178.1 coding downstream 204619 29473342 ~ 29473456 (+)
XLOC_002208 hyou1 coding downstream 501397 29770120 ~ 29791466 (+)
XLOC_002209 h2ax1 coding downstream 547958 29816681 ~ 29817589 (+)
XLOC_002196 CU207388.1 non-coding upstream 1012668 28252678 ~ 28252795 (+)
XLOC_002195 NA non-coding upstream 1019043 28203764 ~ 28246420 (+)
XLOC_002193 NA non-coding upstream 2066481 27169126 ~ 27198982 (+)
XLOC_002212 BX120005.5 non-coding downstream 581849 29850572 ~ 29850667 (+)
XLOC_002213 BX120005.4 non-coding downstream 582277 29851000 ~ 29851095 (+)
XLOC_002214 BX120005.1 non-coding downstream 583424 29852147 ~ 29852242 (+)

Expression


Co-expression Network