XLOC_002203 (sytl2a)


Basic Information

Item Value
gene id XLOC_002203
gene name sytl2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29259882 ~ 29264023 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004230
ATGAGTTTGTCTGTACCTGCATTAATGCAGCAAGAGGTCACTGGCAGTGTAATGAGCATCTACAGTAGTGAGTTTGGTTATGTGGAGGTCAAAGGCACGGTCCAGTTCGCTATTCACTATGTGCAGAAACTGGGAGAGTTCCACATCTTTGTTGTGCAGTGTAAGGATCTCGCTGTGGCGGATGTTAAGAGGAATCGATCTGATCCATATGTTAAATGCTACCTGTTACCCGACAAAGCTAaatatggaaagaaaaaaacgtgTGTGAGAAAGAAGACACTGGATCCAACCTATAATGAAATCCTGCGGTTTAAGATCCCAATGGAGATGCTGAAAAcccaaaaactgaacatttctgtTTGGCACAATGACACGTTTGGGCGGAACAGCTTTCTTGGAGAGGTTGAGGTTGATCTGGCTGAATGGGATTTCAATAACACACAGATGAATGAATATCTACTCAAAGGAAGGGTAAGTGCAGAGATTAAAGTCGCTCTGCGTTTTCTCCCGCAGACTACTCTAAGTCACAAGAACAAGGGGAATGGTGAAGTGCAAATATGGGTGAAGGAATGCAAGAATCTGCCTATTTCCAGAGGCGTTGCCATCGACCCCTTTGTCAAATGTGCAATCCTCCCAGAGAACAACAGGAAAAGCCGTCAGAAGACCAGAGTGTTGAAGAGGGCTCCAAACCCAGTGTTTAACCACACCATGGTTTATGATGGCTTCGGGCATGACGACCTTAAAGACATCTGTGTGGAGCTTACGGTGTGGGATCATGACAGACTGAACAACCACTTCATTGGGGGTATCAGACTTGGACCTGGAACAGGTAAAAGTTATGGCAGTGAAGTAAACTGGATGGACTCTAACGTTGCTGAAGCAGCCCTGTGGGAGAGAATGGTGCAAACTCAAAATGAATGGGTGGAAGATACATTACCTTTGAGAATGATGGTCATGGCAAGAATGTCTAGATAG
>TCONS_00004231
ATGGAGTGCAGAAACAGTGACTGTGCTTCAGTGAGCAGTTTCTACAATGACAGACAGAGATCCTGCAACACTCCTTCTAATTTTAGCACTTGCTCTGAAGTGGCCTCCATGTCCTCTGTCACTGGCAGTGTAATGAGCATCTACAGTAGTGAGTTTGGTTATGTGGAGGTCAAAGGCACGGTCCAGTTCGCTATTCACTATGTGCAGAAACTGGGAGAGTTCCACATCTTTGTTGTGCAGTGTAAGGATCTCGCTGTGGCGGATGTTAAGAGGAATCGATCTGATCCATATGTTAAATGCTACCTGTTACCCGACAAAGCTAaatatggaaagaaaaaaacgtgTGTGAGAAAGAAGACACTGGATCCAACCTATAATGAAATCCTGCGGTTTAAGATCCCAATGGAGATGCTGAAAAcccaaaaactgaacatttctgtTTGGCACAATGACACGTTTGGGCGGAACAGCTTTCTTGGAGAGGTTGAGGTTGATCTGGCTGAATGGGATTTCAATAACACACAGATGAATGAATATCTACTCAAAGGAAGGGTAAGGTGTCACAAGAACAAGGGGAATGGTGAAGTGCAAATATGGGTGAAGGAATGCAAGAATCTGCCTATTTCCAGAGGCGTTGCCATCGACCCCTTTGTCAAATGTGCAATCCTCCCAGAGAACAACAGGAAAAGCCGTCAGAAGACCAGAGTGTTGAAGAGGGCTCCAAACCCAGTGTTTAACCACACCATGGTTTATGATGGCTTCGGGCATGACGACCTTAAAGACATCTGTGTGGAGCTTACGGTGTGGGATCATGACAGACTGAACAACCACTTCATTGGGGGTATCAGACTTGGACCTGGAACAGGTAAAAGTTATGGCAGTGAAGTAAACTGGATGGACTCTAACGTTGCTGAAGCAGCCCTGTGGGAGAGAATGGTGCAAACTCAAAATGAATGGGTGGAAGATACATTACCTTTGAGAATGATGGTCATGGCAAGAATGTCTAGATAG

Function

symbol description
sytl2a Predicted to enable phosphatidylserine binding activity. Predicted to act upstream of or within exocytosis. Predicted to be located in exocytic vesicle and membrane. Orthologous to human SYTL2 (synaptotagmin like 2).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0070382 exocytic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0001786 phosphatidylserine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130723-2 Predicted to enable phosphatidylserine binding activity. Predicted to act upstream of or within exocytosis. Predicted to be located in exocytic vesicle and membrane. Orthologous to human SYTL2 (synaptotagmin like 2).

Ensembl:

ensembl_id ENSDARG00000061956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004230 False 975 mRNA 0.45 8 29259882 29264023
TCONS_00004231 True 1011 mRNA 0.45 7 29260096 29264023

Neighbor

gene id symbol gene type direction distance location
XLOC_002202 picalma coding upstream 34717 29137482 ~ 29225165 (+)
XLOC_002201 NA coding upstream 168281 29091237 ~ 29091601 (+)
XLOC_002200 cblb coding upstream 526880 28587446 ~ 28733002 (+)
XLOC_002199 NA coding upstream 804797 28442909 ~ 28455085 (+)
XLOC_002198 si:ch211-222e20.4 coding upstream 828073 28428222 ~ 28431809 (+)
XLOC_002204 crebzf coding downstream 1440 29265463 ~ 29268723 (+)
XLOC_002205 FP102896.1 coding downstream 69036 29333059 ~ 29333175 (+)
XLOC_002206 dlg2 coding downstream 167506 29431529 ~ 29705509 (+)
XLOC_002207 BX470178.1 coding downstream 209319 29473342 ~ 29473456 (+)
XLOC_002208 hyou1 coding downstream 506097 29770120 ~ 29791466 (+)
XLOC_002196 CU207388.1 non-coding upstream 1007087 28252678 ~ 28252795 (+)
XLOC_002195 NA non-coding upstream 1013462 28203764 ~ 28246420 (+)
XLOC_002193 NA non-coding upstream 2060900 27169126 ~ 27198982 (+)
XLOC_002212 BX120005.5 non-coding downstream 586549 29850572 ~ 29850667 (+)
XLOC_002213 BX120005.4 non-coding downstream 586977 29851000 ~ 29851095 (+)
XLOC_002214 BX120005.1 non-coding downstream 588124 29852147 ~ 29852242 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_13989055_14004354 SYTL2A coding CI01000304 null 13989055 ~ 14004526 (+)