XLOC_002195


Basic Information

Item Value
gene id XLOC_002195
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28203764 ~ 28246420 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005905
GTCACAGTGAGCCCGTAAGAGTCAGACATCACACTCCTACCTACCGTCAGAAAGCATGCTACTAAAAACACGAGGACTGCTATCTTCATGTACATAAAACAAGGATTTTTCACCTCACTTCTGGAACATTCTGGGTCAGGGATTTCTTTGGAAAAAGCATGCTGGTTGTGTGAGATATATGTTCACTGTCAGCACTGCATGATCTGGTCATATTTACCTTTTCAGATGACTAAATGTGTTGTGATATGACTTGGGAAATGCTTGCTGAGAGCAGATTTGGTTCACGGTGGAAGCCATGCGATTTGTACAATCAGGGGGCAATAAAAATGCAGGAAGTGATTATGGCTTCCTGACGTAATCGGACCGTTCCAGGGAGGGAGAGACGAAAAAAATTCAAATCTATCTATCACAAGGAGGAAAAAAATGTGCACCCTGGAGTCCACGTTGACAAATTCTTTAACAAGCTGTGGTCAAAGGGAAGCTGGTTGAAGACTGACTCAGCCCCTCCTTTCAGCAGTTACTGGAAACACGGGGGGAGGCAGGGGGAGGAGGGAGCTTCAGAGAAGTCACATGACCCGTAAGGGCAGGGCTAACCACAGCTTCGGGAGGAGGAGAGGAATCAGGGCGAGGGGGAGGCGGATATGCGCTCTTCCCCAAGCAGATGCCTCCGAATCGGGTTACTTACTCGCCTGCCTGCCTGGGAGTTGGCAGGGGAGAATTCACAGACTAATAAACCCTTTCAGTGCCGGAAACAATGAGTCATGACACCAGATCAgctttttaaacagcaaatgaaACAAGGAAAAAGATTTTTGAAATGTTTGTCTAGTTCTAAATCGAATCAAAACACACTtcaatgtgaataaaaaaaaataaaaatgatacaaTTTGTGTGTATAAAACAACGTGTAATGACTAGAAACGGATGCAGCTGATGATGTCTTGTCTGTTGAGACTCTTTGTGCCAGCCtggctcgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgcaCACGTGCGATATGTCTGCTGCTCTCTAGAAACCAATATGACGACACTTGACATATAATCCCATGCCCTTGACCTCTCGGCAAAGGACGTCTGGAGCAAACATGTTAGACTGTTAGACATCATACAAACACAGAAACATACCTAGAACACATAAACAAATTAGTAAGACACACATACACCCATTAATCATTTCCTGTGGTCTGTTATAGCTGAAAAATCAAACAGTTATTCTAATTTGCAATGCTACAGTTGAGATTGTCCTGGACAAAATGGAAAGAGTTTTTCCAAATCCATTCGGAGAAAGAGACGCGCTTCGTCTTCACCCGCAACACTACCGGAGGATGATTTCGGAAATCGAAGTGAAAGTTTCtggttgcttttaaaaaaagccacagaagaagaagaagaaagcgtCTTCAGTCACAGAGGACATGAGGAGCAAAAGGAGAAACTTTAGGGGGGGGAAATCAGACAGCACAAGAAAACTCTCCTGCAGCGCCAGAGATGCTGTGATCCAGAAGCGGATGTCAGAATGACCAAACAGCGACAGAGAGCGAGTGAGAG
>TCONS_00005906
TTTCAGACAAAGCCCGGGACCCCATGAGCTCATTCAGGCCTGTAATTTACCACTGCCACCACCGCCATACCAATTTCCACAGTCAAACCTGTCAATTTGATGCTTTATGGGAACTGTAGGCAGACACCTAACAGACCATCTACAGGGTTTCCCCGCAGCAAACACAACAAAGGAGCCCAAACGGCACATTATGCAGGAAGTGATTATGGCTTCCTGACGTAATCGGACCGTTCCAGGGAGGGAGAGACGAAAAAAATTCAAATCTATCTATCACAAGGAGGAAAAAAATGTGCACCCTGGAGTCCACGTTGACAAATTCTTTAACAAGCTGTGGTCAAAGGGAAGCTGGTTGAAGACTGACTCAGCCCCTCCTTTCAGCAGTTACTGGAAACACGGGGGGAGGCAGGGGGAGGAGGGAGCTTCAGAGAAGTCACATGACCCGTAAGGGCAGGGCTAACCACAGCTTCGGGAGGAGGAGAGGAATCAGGGCGAGGGGGAGGCGGATATGCGCTCTTCCCCAAGCAGATGCCTCCGAATCGGGTTACTTACTCGCCTGCCTGCCTGGGAGTTGGCAGGGGAGAATTCACAGACTAATAAACCCTTTCAGTGCCGGAAACAATGAGTCATGACACCAGATCAgctttttaaacagcaaatgaaACAAGGAAAAAGATTTTTGAAATGTTTGTCTAGTTCTAAATCGAATCAAAACACACTtcaatgtgaataaaaaaaaataaaaatgatacaaTTTGTGTGTATAAAACAACGTGTAATGACTAGAAACGGATGCAGCTGATGATGTCTTGTCTGTTGAGACTCTTTGTGCCAGCCtggctcgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgcaCACGTGCGATATGTCTGCTGCTCTCTAGAAACCAATATGACGACACTTGACATATAATCCCATGCCCTTGACCTCTCGGCAAAGGACGTCTGGAGCAAACATGTTAGACTGTTAGACATCATACAAACACAGAAACATACCTAGAACACATAAACAAATTAGTAAGACACACATACACCCATTAATCATTTCCTGTGGTCTGTTATAGCTGAAAAATCAAACAGTTATTCTAATTTGCAATGCTACAGTTGAGATTGTCCTGGACAAAATGGAAAGAGTTTTTCCAAATCCATTCGGAGAAAGAGACGCGCTTCGTCTTCACCCGCAACACTACCGGAGGATGATTTCGGAAATCGAAGTGAAAGTTTCtggttgcttttaaaaaaagccacagaagaagaagaagaaagcgtCTTCAGTCACAGAGGACATGAGGAGCAAAAGGAGAAACTTTAGGGGGGGGAAATCAGACAGCACAAGAAAACTCTCCTGCAGCGCCAGAGATGCTGTGATCCAGAAGCGGATGTCAGAATGACCAAACAGCGACAGAGAGCGAGTGAGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005905 False 1574 lncRNA 0.45 2 28203764 28246420
TCONS_00005906 True 1438 lncRNA 0.46 2 28233240 28246420

Neighbor

gene id symbol gene type direction distance location
XLOC_002194 rnft1 coding upstream 34595 28160265 ~ 28169169 (+)
XLOC_002193 NA coding upstream 1004782 27169126 ~ 27198982 (+)
XLOC_002192 cxadr coding upstream 1045524 27096043 ~ 27158240 (+)
XLOC_002191 ehd1b coding upstream 1110730 27068251 ~ 27093034 (+)
XLOC_002190 NA coding upstream 1139359 27061761 ~ 27064405 (+)
XLOC_002196 CU207388.1 coding downstream 6258 28252678 ~ 28252795 (+)
XLOC_002197 ptrh2 coding downstream 60329 28306749 ~ 28309317 (+)
XLOC_002198 si:ch211-222e20.4 coding downstream 181802 28428222 ~ 28431809 (+)
XLOC_002199 NA coding downstream 196489 28442909 ~ 28455085 (+)
XLOC_002200 cblb coding downstream 341026 28587446 ~ 28733002 (+)
XLOC_002181 NA non-coding upstream 1320625 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 1416979 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 1432087 26766385 ~ 26771677 (+)
XLOC_002201 NA non-coding downstream 844817 29091237 ~ 29091601 (+)
XLOC_002205 FP102896.1 non-coding downstream 1086639 29333059 ~ 29333175 (+)
XLOC_002207 BX470178.1 non-coding downstream 1226922 29473342 ~ 29473456 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_13406343_13432947 NA misc CI01000304 null 13403026 ~ 13433611 (-)
tiger barb (Puntius tetrazona) G76625 NA unknown NC_056708.1 CM032077.1 11017110 ~ 11038731 (-)