XLOC_002192 (cxadr)


Basic Information

Item Value
gene id XLOC_002192
gene name cxadr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27096043 ~ 27158240 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004213
CTCCGGAAATCACGTGTGCAGATTCCAGCCAGCCACACAATCCACCTGCGCGAGCTGCGGCTGGACTTTCTGATGCTGCGCGAGAAAGAAGAGTGAACGCGAAACAGCACAAGTCTCGAGGAAAAGTTGTTTTTTCACTCGCACCGGGTAGCAAATTGTGGCTTTAAAGCAGAGGAATGGATATGAGGACGTCTTTTCTCTGCGTAACCTATGTTATTCTTCTCACAGGCTCAGCCTGTGGACTACAGATCACCTCTACTGGTCAGACATCCATTGAGAAAGCCAGCGGAGAGAGTGTAAAGCTGGACTGTCAATTTACTCTTGCTTCTGATGATTCTGGGCCTTTGGACATTGAGTGGAGCTTGCAGCCCTCCGACAACCAGAAAGAAGAGAAAGTGGTGATCGTGTATTCTGGTGACCGGGCCTTTGAACACTACTATGATCctcttaaagggagagttcacttCAACTCGCCTGATCCTAAAAATGGTGATGCCTCCATGAACATCATGGGCCTGAAAGCCACAGACACTGGGACTTATCAGTGCAAGATCAAGAAGGTTCCTGGTATTGCTAGCAGGAAGTACCTGCTAACCGTTATGGTACGTCCTTCTAAACCCAAATGTAGTGCAGAGGGTCAAACTTACGTGGGTAAGAATATGGTGTTGAAGTGTAGCTCTGTGGAAGGCACACAACCTATGGAGTACATCTGGGAGAGAACCTCTGGCAATAAGCTATTGCCTCCATTGGCAATCCTGGATAAAGTCACGGGCACCATGACTCTGAAGAATGCCACCGGGGATGCTTCAGGGACATATCGATGCCAGGCGAAAAACCGCGTTGGAACAGAAGAGTGTGTGGTAGAGGTCACTATAACGCAACCACCTAATACAGCTGGGATCATTGCAGGAGTAATAATCTGCATTCTGCTGCTTCTCATTCTCCTCGCCCTCATCCTCTTCTGCTGCTGCCGTGCTCGCCACAAGAAGAAGTACGAGAAGGAAATCGCCTATGAGATCAGAGAGGATGTGCCTCCTCCAAAGAGCCGTGTTTCCACCGCCCGCAGTTTCACCAGTGTGGGCAGCCAACGCTCTTCTCTTGGCTCCATGTCTCCTTCCAACCTGCACGAGTACAGCAAGCCCCAGTATGACAAGATTCCCTCTGAAGAGTACGACAGGCCCCCTAGCCACGCTCCCATTCCCCCGCCCAGCAGAATGGCCGGCCCCAACCTCAGCCGAATGGGGGCCATCCCAGTCATGATCCCTGCCCAAAACAAGGATGGGTCTATTGTGTAAAACTGAACTGGGATCTTTCTCTGCACATTTTGACGGTCTCTGTTCTTATTCATCATTTTAGCGGATTTTGTGAAGGAGCAAATAGGAGGAACTCAGCTGTACTGATAATGCAATTCGGCTGGCAGAACTTCAACAAACATCAACACAAACTTTATTCAACAAGATGCAGAAAGTGATTTGTCTGCTcgttttgtaaataatgcaacgCATGATGATTTTTTcccattttgttttctttaaagatagaaGGCCCTTTTTTAATGTAAGGCACTTGAATTGGTTGCCTATTAAGTGTTCTCCAGAGATGAAttcaaatcattcaaatgaaaTGTACATGTAATACAACCCCATTTTAGATAAAAACTCTCAAgctatttgttaatgtttttttaaaccagTTTGAAATATTTTCTGGCAACTTGAACCATTAATCTATGAcgattgttttagtttttttttttactttgttttttttttaacttttttgctGGCAAAGATTTACTCAAAGGGTCTGTGGAAAATATGATGAATAGCTTTGGTTTCTGGATGTTTCTCAAAAAGATAACAACAGCGTTTGCTTGGATTGAAGATTATTTacctgtgatgtgtgtgtgtgtgtgtatatatacatgaaTATGAAATTGATTTATTTGAAGATGAGCTAA
>TCONS_00004214
TGCTGCGCGAGAAAGAAGAGTGAACGCGAAACAGCACAAGTCTCGAGGAAAAGTTGTTTTTTCACTCGCACCGGGTAGCAAATTGTGGCTTTAAAGCAGAGGAATGGATATGAGGACGTCTTTTCTCTGCGTAACCTATGTTATTCTTCTCACAGGCTCAGCCTGTGGACTACAGATCACCTCTACTGGTCAGACATCCATTGAGAAAGCCAGCGGAGAGAGTGTAAAGCTGGACTGTCAATTTACTCTTGCTTCTGATGATTCTGGGCCTTTGGACATTGAGTGGAGCTTGCAGCCCTCCGACAACCAGAAAGAAGAGAAAGTGGTGATCGTGTATTCTGGTGACCGGGCCTTTGAACACTACTATGATCctcttaaagggagagttcacttCAACTCGCCTGATCCTAAAAATGGTGATGCCTCCATGAACATCATGGGCCTGAAAGCCACAGACACTGGGACTTATCAGTGCAAGATCAAGAAGGTTCCTGGTATTGCTAGCAGGAAGTACCTGCTAACCGTTATGGTACGTCCTTCTAAACCCAAATGTAGTGCAGAGGGTCAAACTTACGTGGGTAAGAATATGGTGTTGAAGTGTAGCTCTGTGGAAGGCACACAACCTATGGAGTACATCTGGGAGAGAACCTCTGGCAATAAGCTATTGCCTCCATTGGCAATCCTGGATAAAGTCACGGGCACCATGACTCTGAAGAATGCCACCGGGGATGCTTCAGGGACATATCGATGCCAGGCGAAAAACCGCGTTGGAACAGAAGAGTGTGTGGTAGAGGTCACTATAACGCAACCACCTAATACAGCTGGGATCATTGCAGGAGTAATAATCTGCATTCTGCTGCTTCTCATTCTCCTCGCCCTCATCCTCTTCTGCTGCTGCCGTGCTCGCCACAAGAAGAAGTACGAGAAGGAAATCGCCTATGAGATCAGAGAGGATGTGCCTCCTCCAAAGAGCCGTGTTTCCACCGCCCGCAGTTTCACCAGTGTGGGCAGCCAACGCTCTTCTCTTGGCTCCATGTCTCCTTCCAACCTGCACGAGTACAGCAAGCCCCAGTATGACAAGATTCCCTCTGAAGAGTACGACAGGCCCCCTAGCCACGCTCCCATTCCCCCGCCCAGCAGAATGGCCGGCCCCAACCTCAGCCGAATGGGGGCCATCCCAGTCATGATCCCTGCCCAAAACAAGGATGGGTCTATTGTGTAAAACTGAACTGGGATCTTTCTCTGCACATTTTGACGGTCTCTGTTCTTATTCATCATTTTAGCGGATTTTGTGAAGGAGCAAATAGGAGGAACTCAGCTGTACTGATAATGCAATTCGGCTGGCAGAACTTCAACAAACATCAACACAAACTTTATTCAACAAGATGCAGAAAGTGATTTGTCTGCTcgttttgtaaataatgcaacgCATGATGATTTTTTcccattttgttttctttaaagatagaaGGCCCTTTTTTAATGTAAGGCACTTGAATTGGTTGCCTATTAAGTGTTCTCCAGAGATGAAttcaaatcattcaaatgaaaTGTACATGTAATACAACCCCATTTTAGATAAAAACTCTCAAgctatttgttaatgtttttttaaaccagTTTGAAATATTTTCTGGCAACTTGAACCATTAATCTATGAcgattgttttagtttttttttttactttgttttttttttaacttttttgctGGCAAAGATTTACTCAAAGGGTCTGTGGAAAATATGAAAGATAACAACAGCGTTTGCTTGGATTGAAGATTATTTacctgtgatgtgtgtgtgtgtgtgtatatatacatgaaTATGAAATTGATTTATTTGAAGATGAGCT

Function

symbol description
cxadr Enables virus receptor activity. Acts upstream of or within kidney development. Located in bicellular tight junction and cell surface. Is expressed in several structures, including digestive system; epithelium; heart; nervous system; and pronephros. Orthologous to human CXADR (CXADR Ig-like cell adhesion molecule).

GO:

id name namespace
GO:0001822 kidney development biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0009986 cell surface cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001618 virus receptor activity molecular_function

KEGG:

id description
ko05416 Viral myocarditis
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-020814-2 Enables virus receptor activity. Acts upstream of or within kidney development. Located in bicellular tight junction and cell surface. Is expressed in several structures, including digestive system; epithelium; heart; nervous system; and pronephros. Orthologous to human CXADR (CXADR Ig-like cell adhesion molecule).

Ensembl:

ensembl_id ENSDARG00000043658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004213 False 1960 mRNA 0.45 7 27096043 27158240
TCONS_00004214 True 1853 mRNA 0.44 8 27096116 27158238

Neighbor

gene id symbol gene type direction distance location
XLOC_002191 ehd1b coding upstream 3009 27068251 ~ 27093034 (+)
XLOC_002190 NA coding upstream 31638 27061761 ~ 27064405 (+)
XLOC_002189 wdr74 coding upstream 37057 27052642 ~ 27058986 (+)
XLOC_002188 BX248510.6 coding upstream 52879 27021164 ~ 27043164 (+)
XLOC_002187 faub coding upstream 104040 26990095 ~ 26992003 (+)
XLOC_002193 NA coding downstream 10886 27169126 ~ 27198982 (+)
XLOC_002194 rnft1 coding downstream 1002025 28160265 ~ 28169169 (+)
XLOC_002195 NA coding downstream 1045524 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 coding downstream 1094438 28252678 ~ 28252795 (+)
XLOC_002197 ptrh2 coding downstream 1148509 28306749 ~ 28309317 (+)
XLOC_002181 NA non-coding upstream 212904 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 309258 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 324366 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 466761 26628793 ~ 26629282 (+)
XLOC_002199 NA non-coding downstream 1284669 28442909 ~ 28455085 (+)
XLOC_002201 NA non-coding downstream 1932997 29091237 ~ 29091601 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12653236_12670625 CXADR coding CI01000304 null 12652837 ~ 12670983 (+)