XLOC_002189 (wdr74)


Basic Information

Item Value
gene id XLOC_002189
gene name wdr74
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27052642 ~ 27058986 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004209
CGGAACTAAAAGTTCAGTTTGTAAGTTACACCCGGACAGAATTGTGTGTGACAGTAGCGTGGTTGTGTTTTCATTAAACTAGAAACTACAGAATTAATCGTTTCCACTGAAATGGCTGCTAAAAGCCAAATATGCTCAATATGGCTGGGCTCAGAAACCGGAATATTAAAAGGGGTGAGTCTTCGCAAAAAGCAGGCGTTTAACTTCTGTGAGATGAGCTGTTTGAGTCGGGATCAGGAGGTCTGTGTGATGGCATGGGGAGACCCTTACGAATCAGAGttgTTGCTGGGCAGTGTGAACGGCACTGTGAAGACTTTCAGCACAGATAAGGGCATCTTCACAGCCACTAAAGAGTGTGGAGATCCTTCACAGGGTAAATTCACAGGACTGGCCGTCACTGACAGTTCCATGATAACATGTGTGGAGTCAGGACTGCTGAAAGTGTGGAAGGAAGGCAGTACAGATACTGTGGAGGTAAATGTTGGAAAGGACATTTGCAAAATGCGACAGAACCAGTCACAGCGCCATCATGTGGCTACAGGGGGTAAAGAGAACCCACTGAAAGTCTGGGACCTGGAGAAACCAGATAAACCAATATTCACAGCCAAAAATgtAGCCCATGACTGGTTGGATATGCGAGTACCTGTGTGGGTCAGAGACATCAGCTTTATCGCAGATTCAGATAAAATAGTCACATGCACTGGACATCATAAGGTGCGTGTGTATGACCCCTCGACGCCTCAGAGGAGGCCGGTGTTGGAGGCAGATTTTGGAGAGTACCCGCTCACAGCGCTCTCTCTTCCTGCCAGCCAGGACGCAGTGGTCGTGGGCAACACTCACGGGGAGCTCGCCATCCTCGACCTCCGGAAAGGGCTTGTTCGTGGGTGTTTTAAGGGTCTGGCGGGGGCAGTGCGGGGGTTGCAGTGCCATCCTTCCCTCCCGTTGGTGGCCTCTTGTGGTTTAGATCGTTTTCTGAGAGTACACAGCCTGGAGGACCGCTCTTTACAGCACAAGgtATATTTGAAGTCACGACTCAATTGTGTGCTGCTCTCTAGCAGAGATCTGGAGTCATCAAGTGACAGTGGAGATGTAGAGGAGGTGAAAGCAGAGGAAGAGGATGAAGTTTGGGATAACATGGAAACAGTGACGGAGAAGACAAAAAAGAGGGCCGCTGAGAAAGACGAAGCAGCTGTTACTGGAGCAgatggaaagaaaaaaaggaaacaagTGAATAAGTGATTACTGATGGACATTATTAGCATTTTCTACACAGTTTATGTTATGTCACTGTATCAGCAGTGGCTAAACCTGAAAGACTGTTTAATACATATGTAAAAGTATGTAAAGGTCATCTTTTTGGCTCCTGGAGTGGATTTGAACATAAAATTATCTGAATTGAGAAATTCAGATGaactttttttaattgtataaaaatgttaaaggcTTTACAGTTTTAGTGAATTTCCCATCCGTCTCTGTGGTTCTGAATTAAACAGAGTTGAATGTcaaaaa

Function

symbol description
wdr74 Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human WDR74 (WD repeat domain 74).

GO:

id name namespace
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0005730 nucleolus cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060929-1138 Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human WDR74 (WD repeat domain 74).

Ensembl:

ensembl_id ENSDARG00000061993

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004209 True 1512 mRNA 0.46 10 27052642 27058986

Neighbor

gene id symbol gene type direction distance location
XLOC_002188 BX248510.6 coding upstream 9478 27021164 ~ 27043164 (+)
XLOC_002187 faub coding upstream 60639 26990095 ~ 26992003 (+)
XLOC_002186 tm7sf2 coding upstream 74266 26972755 ~ 26978376 (+)
XLOC_002185 vps51 coding upstream 80212 26961965 ~ 26972430 (+)
XLOC_002184 frmd8 coding upstream 91433 26944418 ~ 26961209 (+)
XLOC_002190 NA coding downstream 2775 27061761 ~ 27064405 (+)
XLOC_002191 ehd1b coding downstream 9265 27068251 ~ 27093034 (+)
XLOC_002192 cxadr coding downstream 37057 27096043 ~ 27158240 (+)
XLOC_002193 NA coding downstream 110140 27169126 ~ 27198982 (+)
XLOC_002194 rnft1 coding downstream 1101279 28160265 ~ 28169169 (+)
XLOC_002181 NA non-coding upstream 169503 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 265857 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 280965 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 423360 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 488121 26564221 ~ 26564521 (+)
XLOC_002195 NA non-coding downstream 1144778 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 non-coding downstream 1193692 28252678 ~ 28252795 (+)
XLOC_002199 NA non-coding downstream 1383923 28442909 ~ 28455085 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location