XLOC_002185 (vps51)


Basic Information

Item Value
gene id XLOC_002185
gene name vps51
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26961965 ~ 26972430 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004202
ATGAGTTCAGCCACAACACCACCGGACTCGGACCCGGCCCAGCGGCGGCGGGTTCACAGTATGCTGAAGCTCTACTACGGCCTGAATGAGGAAGGAAAAGCCACAGAACAAGCCGAGTCTCTGGATCCTTGCGATATCAACGGACCGCATTTCGACCCagagatttatttaaataagTTGAGGAAGGAGTGTTCTCTGACTGAGCTGATGGACCACGAGAGCTGCATGGTCAAGCAGATCAGATCTCTGGACAGTGACATGCAAACTCTGGTTTATGAAAACTACAACAAGTTCATCTCAGCCACAGACACAATCAGAAAAATGAAGAATGACTTTAAGAAGATGGAGGATGAAATGGACTGCCTGTCTGCAAACATGGCAGCTATCACGGAGTTTAGTGCTCGCATTAGCGGGACGCTGCAGGATCAGCATGCACAGATCACTAAATTATCagGTGTTCATACTCTTCTCCGTAAACTGCAGTTCCTGTTCGAGCTGCCAGCAAGGCTCAATAAGTGTCTGGAGCTGCAGGCCTATGCCCAGGCAGTGAGCTCCCATCGGAGGGCACGCTGTGTATTGCAGCAGTACAGTCATATGCCCTCTTTTAGGGGCATCCAAGATGACTGCCATGTCATTATGGAGCAGCTCGCTCAACAACTGCGGCAGAAATTCAGGGATGGAGGTTCGAGTGCTAAAGACCTCTCTGAATGTGTCGAGCTTCTTCTACAGCTGGATGAGCCAGCGGAAGAACTCTGTGACAAATTCTTAAGCCACGCCCAGTCTCGATTAGAGGCGGATCTCCAGGGGTTGGAGGCGGAGCTTAAAGACTCAGCAGTTACTGACACTGGTGCTGGCTCTGTTCAAAAAACAAGCCCTGGATCAAATCCTGTATCCCCTAGTTCCTCTGTGTCCAATCCCTTCCTTTCCCCTGCCGCCGGAACAGACATATTGGAGTTCATAGATCGAGGGTGTAACGAGTTTGTCAGCAATCTTTGTTTGGTCATTGCCTCTTATCAAGAATTGTTCATTAACCGTCCACAAGAGAGTGAACTAGCTTCCAAAAACATCCCGGAGATGGCGAATGGCAAGCTGCACGTGTTTGTGGACACTCTGGCTGCGAGATACTTCTCCCTAGTAGAGCGGAGGATACAGGAGGAGAAGGGAGTGGGAGATAACTCTCTGTTGGTGAGAGCTCTGGATCGCTTCCATCGCAGATTACAGGCCATATCCAAATTACTCCCGGGGTCGGCAGTGCCAAGCCAAGGAACTGAGATAGTGGTGCGGGCGGCGAGGGAGAGGATCAAACAGTACCTGTCTGCCTTACAGACCTTCTACCATGACAGCCTTACTGATGTGAGACAGGCTTTGGCTGCTCCTCGCTTATCAGTGGGAGGGGCCAGTGCATCAGGAGGTGGGGCTCTTGTGGGAGGGGCTTCAAGTAAGGATGCCCCGCCCAGTCTGCCAGAACTGCTGACGTCTTTATCGAACTTCATTCTCAATCAATTAAAGTCTGTGTTGGCATCAGTGCATCTGTTCACAGCAAAGGATATAACCTTTTCCAACAAGCCTTATTTCAAGGGTGAGTTTTGCAGTCAGGGTGTTCGTGAGGGTCTGGTGGTGAGCTTTATTAAGTTCATCTGCCAGTCGTCTCGGCAGTATTGTGAGAGCGCAGGCGACAGAGGAGGATCCACACCTCCTGCTCTCCTCCTGCTGCTCTCTCGTCTCTGTCTGGACTACGAGACCTCCACCATCTCCTACATCCTCACGCTCACAGATGAACAGTTTCTTGTACAGCACCACACTCCAGTCACCCCAGTTACAGCACTTTGTGCAGAGGCCAGAGAAGCTGCTCAGAAATTACTGAACCACTATGTGAAGGTTCAGGGATTAATCATCAGTCAGATGCTGAGGAAGAGCGTGGAAACGAGAGACTGGGTGAACACTATTGAACCTAGAAATGTTCGGGCTGTAATGAAGAGGGTGGTGGAAGATACCACTTCTATTGATGTACAGgTGGGATTGCTTTATGAAGAGGGTGTAAGGAAAGCCCACAGCAGTGACTCCAGCAAACGCACCTTCTCTGTGTACAGCAGCTCAAGACAGCAGATCCGCTACGCACCAAGCTACACTCCCAGTGCTCCAATGGACACCAACCTGCTAAGTAACATTCACAAACTATTTTCCGAGAGGATTGATATCTTTAGTCCAGTGGAGTTCAACAAGGTCTCTGTGCTAACTGGCATCATTAAGATAAGTCTGAAGACGTTCCTCGAATGTGTACGTCTCCGTACATTTGGCAGATACGGACTGCAGCAAATCCAGGTGGACTGCCACTACTTGCAGATGTACTTGTGGCGCTTCGTGTCTGATGAGAACTTGGTGCACTTCTTGTTGGATGAGATTGTGGGTAGTGCTGCCCACCGTTGCCTTGACCCTTTGCCAATGGAGCAAAGTGTCATTGAAGTCATCTGTGAGAGGGGATAGAGTGGGCACATTCGCTCACCTTTTCTCCTAAACATTCAATCCTGAACTGGCAGACAATATTAATGCATCGACTACTGAAAAACTGCAAATATAAGCATCAATTTAGATTATcacataaaaattatataaagtcACTGATGTCAGGGAAGATCTGGATTGAGATCCTAACTTTACCATACATTTTTAAGAATTGAGTGTGTGGATTGATTTGAGATtcagaaaataaactaaa

Function

symbol description
vps51 Enables small GTPase binding activity. Acts upstream of or within several processes, including Golgi organization; lipid digestion; and regulation of phospholipase activity. Predicted to be located in recycling endosome. Predicted to be part of EARP complex and GARP complex. Predicted to be active in membrane. Is expressed in digestive system; head; heart; and trunk musculature. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human VPS51 (VPS51 subunit of GARP complex).

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0007030 Golgi organization biological_process
GO:0007041 lysosomal transport biological_process
GO:0044241 lipid digestion biological_process
GO:0015031 protein transport biological_process
GO:0032456 endocytic recycling biological_process
GO:0010517 regulation of phospholipase activity biological_process
GO:0006869 lipid transport biological_process
GO:0005768 endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000938 GARP complex cellular_component
GO:1990745 EARP complex cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-6008 Enables small GTPase binding activity. Acts upstream of or within several processes, including Golgi organization; lipid digestion; and regulation of phospholipase activity. Predicted to be located in recycling endosome. Predicted to be part of EARP complex and GARP complex. Predicted to be active in membrane. Is expressed in digestive system; head; heart; and trunk musculature. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human VPS51 (VPS51 subunit of GARP complex).

Ensembl:

ensembl_id ENSDARG00000062016

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004202 True 2716 mRNA 0.49 11 26961965 26972430

Neighbor

gene id symbol gene type direction distance location
XLOC_002184 frmd8 coding upstream 756 26944418 ~ 26961209 (+)
XLOC_002183 CR450793.1 coding upstream 20415 26935155 ~ 26941550 (+)
XLOC_002182 rab1bb coding upstream 28257 26926654 ~ 26933708 (+)
XLOC_002180 ehbp1l1b coding upstream 36454 26871486 ~ 26925511 (+)
XLOC_002181 NA coding upstream 78826 26882702 ~ 26883139 (+)
XLOC_002186 tm7sf2 coding downstream 325 26972755 ~ 26978376 (+)
XLOC_002187 faub coding downstream 17665 26990095 ~ 26992003 (+)
XLOC_002188 BX248510.6 coding downstream 48734 27021164 ~ 27043164 (+)
XLOC_002189 wdr74 coding downstream 80212 27052642 ~ 27058986 (+)
XLOC_002190 NA coding downstream 89331 27061761 ~ 27064405 (+)
XLOC_002175 NA non-coding upstream 175180 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 190288 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 332683 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 397444 26564221 ~ 26564521 (+)
XLOC_002193 NA non-coding downstream 196696 27169126 ~ 27198982 (+)
XLOC_002195 NA non-coding downstream 1231334 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 non-coding downstream 1280248 28252678 ~ 28252795 (+)
XLOC_002199 NA non-coding downstream 1470479 28442909 ~ 28455085 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12539537_12551905 VPS51 coding CI01000304 null 12539329 ~ 12552251 (+)