XLOC_002190


Basic Information

Item Value
gene id XLOC_002190
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27061761 ~ 27064405 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005902
CGACGCTCCCCTCTCACCTGCTGCTCTCGCCTTGTGCTGTCGTTCACTCTGCTGTTTTTTTTGGTtactctttaatttttttattttagcttcagTTAACTCTGTAATCTCTATGTTTATTTAAGCTTTCCTTTGGTTTGGTCTTTCtcggtttttattttttagctccaAAATCCTGGACTCCAACGAGGAAGAACTGCGAAGGTGGCAGCACTCATTTAAGATGGACATGAATGGAACATTAAATCTGAAATCCACTTCCTTCCGTCGTCCATCTGCAAAGACTTGGTGCTGACTGCTTGTAACAGCAACTCCATGTGGAAGGTTTGTGTCTTCCAGTGGAGCTGCTGTTGCGTGCAGATAGTCACCATTATCTGCTTTATGCATTATtgtgtttcattttaattcagattTCATTTATGTGGTCATAAAGGCGCTTGCATGTTAGCGGAGAGCATGGTTAAGTCTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTTTATCCTACTAAACACACACTGATCTGCTTAGAGACTGCAGGAGACTGTATAAATGTCGGTGGactacagaaatgtaaaacagggtatctgctgggtcttaaaaagtcttacattcactgaaatattgtgttgtgtgtcttaaataatttcaaacagaACAATTTATCTCTTACAAGTTAACTTCCATTCATGCAAAAACTATTTTCAGAAGTAAATAGAGTTTCTATTACTTGATTAAGAGTCTCGCgccccccttttttatttttatttgttttatttattttttgttatgttcCTAGTCATGTACTTTTAAATCAACACTGTGTTGGATTGTTGAATATGCCATAATGGTTTGTACTTGAacttatggtcaaataaataataaaaaataagtaaggGGGTGTAgacataatttttataaataggcatgaaaCTTAAGGCTTTATACCAGAAATGCATTAGGTTGAATAGAAGTTATACTCTATAAATTTGGATCAAAAGcaccaacaaatatatatttttgattaattatgTAATCGCACACAATAAATATACTCTTTAACAAGGTTAAACTTGTCattaaaggaaggaagaaagtAATATTATGTTGAATATAGTGAATATAACTAGagttttattttgacacattaaattatgttgctaagaaataattacatttttttttttctgatttttgtggcaaaaaaaaaatctgttggcCCAATCGGGCCATCAGAAATAAttattagtgtttagccctgtataagtctaacatttcatttataatggtctttaaaagggtcttaaataGTCACAAATGTCTTGTAATGCTTTCTTTTGGTTGCGAGGggatatttatgtatttatttcatgGTAGCAATAAGATTATTTAActgtatttagtttattttggacattaaaatattttaaaatcagtttCTTTTGAAATAAATATGATTGTCACCCT
>TCONS_00005903
TCCAACGAGGAAGAACTGCGAAGGTAGCAAGGAGCAGTGGCGAGGTTTACAGCAAGGCAAAGTCTAAAATATGATATGAATGAAGACACCAAGAACCTGATAGAGATTATTACAAGTCTAACCTGTTACTAAAAGGAGGTGATGTGCAAAATGAAGACATAAACGTATATGAATTATTAAACGACACACCCTTATTCCTCTTAGCCCGCACGCAAACTCTGCCGAGCACCCTTGTATTGACTGCCATCATAAAATTGCTGTTATCAAGATCAGTCTTAGCACTTTGGACGTGCTGTTGGCCAATAATGGAGTCTATGGCATGTCATAAAGATGAAAAAGAAACAAGAGGTCAAAGTCATGAGCCAACAGAGGAACTCTCACATGTCCTTAATGGCAGTCATTACCCTTTGTCTGAATCCTGATTGAACTTCTCATTATGCTTTTGTTTCAGGTGGCAGCACTCATTTAAGATGGACATGAATGGAACATTAAATCTGAAATCCACTTCCTTCCGTCGTCCATCTGCAAAGACTTGGTGCTGACTGCTTGTAACAGCAACTCCATGTGGAAGGTTTGTGTCTTCCAGTGGAGCTGCTGTTGCGTGCAGATAGTCACCATTATCTGCTTTATGCATTATtgtgtttcattttaattcagattTCATTTATGTGGTCATAAAGGCGCTTGCATGTTAGCGGAGAGCATGGTTAAGTCTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTTTATCCTACTAAACACACACTGATCTGCTTAGAGACTGCAGGAGACTGTATAAATGTCGGTGGactacagaaatgtaaaacagggtatctgctgggtcttaaaaagtcttacattcactgaaatattgtgttgtgtgtcttaaataatttcaaacagaACAATTTATCTCTTACAAGTTAACTTCCATTCATGCAAAAACTATTTTCAGAAGTAAATAGAGTTTCTATTACTTGATTAAGAGTCTCGCgccccccttttttatttttatttgttttatttattttttgttatgttcCTAGTCATGTACTTTTAAATCAACACTGTGTTGGATTGTTGAATATGCCATAATGGTTTGTACTTGAacttatggtcaaataaataataaaaaataagtaaggGGGTGTAgacataatttttataaataggcatgaaaCTTAAGGCTTTATACCAGAAATGCATTAGGTTGAATAGAAGTTATACTCTATAAATTTGGATCAAAAGcaccaacaaatatatatttttgattaattatgTAATCGCACACAATAAATATACTCTTTAACAAGGTTAAACTTGTCattaaaggaaggaagaaagtAATATTATGTTGAATATAGTGAATATAACTAGagttttattttgacacattaaattatgttgctaagaaataattacatttttttttttctgatttttgtggcaaaaaaaaaatctgttggcCCAATCGGGCCATCAGAAATAAttattagtgtttagccctgtataagtctaacatttcatttataatggtctttaaaagggtcttaaataGTCACAAATGTCTTGTAATGCTTTCTTTTGGTTGCGAGGggatatttatgtatttatttcatgGTAGCAATAAGATTATTTAActgtatttagtttattttggacattaaaatattttaaaatcagtttCTTTTGAAATAAATATGATTGTCACCCT
>TCONS_00004210
TGGTGCTGACTGCTTGTAACAGCAACTCCATGTGGAAGGTTTGTGTCTTCCAGTGGAGCTGCTGTTGCGTGCAGATAGTCACCA
>TCONS_00004211
CTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTT

Function

GO:

id name namespace
GO:0065008 regulation of biological quality biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0042133 neurotransmitter metabolic process biological_process
GO:0048878 chemical homeostasis biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000080041 ENSDARG00000080851

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005902 False 1518 lncRNA 0.34 2 27061761 27064405
TCONS_00005903 False 1765 lncRNA 0.35 2 27061942 27064405
TCONS_00004210 False 84 miRNA 0.51 1 27063174 27063257
TCONS_00004211 True 85 miRNA 0.53 1 27063354 27063438

Neighbor

gene id symbol gene type direction distance location
XLOC_002189 wdr74 coding upstream 2775 27052642 ~ 27058986 (+)
XLOC_002188 BX248510.6 coding upstream 18597 27021164 ~ 27043164 (+)
XLOC_002187 faub coding upstream 69758 26990095 ~ 26992003 (+)
XLOC_002186 tm7sf2 coding upstream 83385 26972755 ~ 26978376 (+)
XLOC_002185 vps51 coding upstream 89331 26961965 ~ 26972430 (+)
XLOC_002191 ehd1b coding downstream 3846 27068251 ~ 27093034 (+)
XLOC_002192 cxadr coding downstream 31638 27096043 ~ 27158240 (+)
XLOC_002193 NA coding downstream 104721 27169126 ~ 27198982 (+)
XLOC_002194 rnft1 coding downstream 1095860 28160265 ~ 28169169 (+)
XLOC_002195 NA coding downstream 1139359 28203764 ~ 28246420 (+)
XLOC_002181 NA non-coding upstream 178622 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 274976 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 290084 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 432479 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 497240 26564221 ~ 26564521 (+)
XLOC_002196 CU207388.1 non-coding downstream 1188273 28252678 ~ 28252795 (+)
XLOC_002199 NA non-coding downstream 1378504 28442909 ~ 28455085 (+)
XLOC_002201 NA non-coding downstream 2026832 29091237 ~ 29091601 (+)

Expression


Co-expression Network