RNA id: TCONS_00005902


Basic Information

Item Value
RNA id TCONS_00005902
length 1518
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_002190
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27061761 ~ 27064405 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACGCTCCCCTCTCACCTGCTGCTCTCGCCTTGTGCTGTCGTTCACTCTGCTGTTTTTTTTGGTtactctttaatttttttattttagcttcagTTAACTCTGTAATCTCTATGTTTATTTAAGCTTTCCTTTGGTTTGGTCTTTCtcggtttttattttttagctccaAAATCCTGGACTCCAACGAGGAAGAACTGCGAAGGTGGCAGCACTCATTTAAGATGGACATGAATGGAACATTAAATCTGAAATCCACTTCCTTCCGTCGTCCATCTGCAAAGACTTGGTGCTGACTGCTTGTAACAGCAACTCCATGTGGAAGGTTTGTGTCTTCCAGTGGAGCTGCTGTTGCGTGCAGATAGTCACCATTATCTGCTTTATGCATTATtgtgtttcattttaattcagattTCATTTATGTGGTCATAAAGGCGCTTGCATGTTAGCGGAGAGCATGGTTAAGTCTAGGACACAGGGTGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGCCCTGTTTATCCTACTAAACACACACTGATCTGCTTAGAGACTGCAGGAGACTGTATAAATGTCGGTGGactacagaaatgtaaaacagggtatctgctgggtcttaaaaagtcttacattcactgaaatattgtgttgtgtgtcttaaataatttcaaacagaACAATTTATCTCTTACAAGTTAACTTCCATTCATGCAAAAACTATTTTCAGAAGTAAATAGAGTTTCTATTACTTGATTAAGAGTCTCGCgccccccttttttatttttatttgttttatttattttttgttatgttcCTAGTCATGTACTTTTAAATCAACACTGTGTTGGATTGTTGAATATGCCATAATGGTTTGTACTTGAacttatggtcaaataaataataaaaaataagtaaggGGGTGTAgacataatttttataaataggcatgaaaCTTAAGGCTTTATACCAGAAATGCATTAGGTTGAATAGAAGTTATACTCTATAAATTTGGATCAAAAGcaccaacaaatatatatttttgattaattatgTAATCGCACACAATAAATATACTCTTTAACAAGGTTAAACTTGTCattaaaggaaggaagaaagtAATATTATGTTGAATATAGTGAATATAACTAGagttttattttgacacattaaattatgttgctaagaaataattacatttttttttttctgatttttgtggcaaaaaaaaaatctgttggcCCAATCGGGCCATCAGAAATAAttattagtgtttagccctgtataagtctaacatttcatttataatggtctttaaaagggtcttaaataGTCACAAATGTCTTGTAATGCTTTCTTTTGGTTGCGAGGggatatttatgtatttatttcatgGTAGCAATAAGATTATTTAActgtatttagtttattttggacattaaaatattttaaaatcagtttCTTTTGAAATAAATATGATTGTCACCCT

Function

GO:

id name namespace
GO:0065008 regulation of biological quality biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0042133 neurotransmitter metabolic process biological_process
GO:0048878 chemical homeostasis biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004206 lncRNA upstream 84807 26973601 ~ 26976954 (+) True XLOC_002186
TCONS_00005717 lncRNA upstream 178622 26882702 ~ 26883139 (+) True XLOC_002181
TCONS_00005716 lncRNA upstream 274976 26786369 ~ 26786785 (+) True XLOC_002175
TCONS_00004188 lncRNA upstream 290084 26766385 ~ 26771677 (+) True XLOC_002174
TCONS_00005715 lncRNA upstream 432479 26628793 ~ 26629282 (+) True XLOC_002167
TCONS_00005904 lncRNA downstream 104721 27169126 ~ 27198982 (+) True XLOC_002193
TCONS_00005905 lncRNA downstream 1139359 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00005906 lncRNA downstream 1168835 28233240 ~ 28246420 (+) True XLOC_002195
TCONS_00004221 lncRNA downstream 1365152 28429557 ~ 28430772 (+) True XLOC_002198
TCONS_00005907 lncRNA downstream 1378504 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00004209 mRNA upstream 2775 27052642 ~ 27058986 (+) True XLOC_002189
TCONS_00004208 mRNA upstream 18597 27021164 ~ 27043164 (+) True XLOC_002188
TCONS_00004207 mRNA upstream 69758 26990095 ~ 26992003 (+) True XLOC_002187
TCONS_00004203 mRNA upstream 83385 26972755 ~ 26978376 (+) False XLOC_002186
TCONS_00004205 mRNA upstream 83568 26973140 ~ 26978193 (+) False XLOC_002186
TCONS_00004212 mRNA downstream 3846 27068251 ~ 27093034 (+) True XLOC_002191
TCONS_00004213 mRNA downstream 31638 27096043 ~ 27158240 (+) False XLOC_002192
TCONS_00004214 mRNA downstream 31711 27096116 ~ 27158238 (+) True XLOC_002192
TCONS_00004215 mRNA downstream 1095860 28160265 ~ 28169169 (+) False XLOC_002194
TCONS_00004218 mRNA downstream 1242344 28306749 ~ 28309317 (+) False XLOC_002197
TCONS_00004170 other upstream 755418 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004166 other upstream 1097362 25964284 ~ 25964399 (+) True XLOC_002158
TCONS_00004165 other upstream 1101013 25948242 ~ 25960748 (+) True XLOC_002157
TCONS_00004149 other upstream 2388832 24668774 ~ 24672929 (+) False XLOC_002143
TCONS_00004147 other upstream 2397312 24660142 ~ 24664449 (+) False XLOC_002143
TCONS_00004216 other downstream 1095892 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004217 other downstream 1188273 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004234 other downstream 2202386 29266791 ~ 29268413 (+) True XLOC_002204
TCONS_00004235 other downstream 2268654 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004237 other downstream 2408937 29473342 ~ 29473456 (+) True XLOC_002207

Expression Profile

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