XLOC_002197 (ptrh2)


Basic Information

Item Value
gene id XLOC_002197
gene name ptrh2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28306749 ~ 28309317 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004218
TTTCGCGGGTTCTTTAAACTCGTGACGTCATCAGTAAGCGTCTTCCTGTCACAAGCGGTGTGGAGTTGGAAGCAAACTTCAGGTTGCTGAATCATTTTGCTTTGTGACATGAGGCTGGACTCTCTGTACGGGCCGTTCGGTCTGGGTGTTCTGGCTGGTCTGGGCTGCGGGCTCTGTGTCGGATGGCACCTCAGTGGGCGTTTTGGCAGATCGTCCCGCAGCATGATGACAGCTTTAGGGAACAGCGCCAGCAATGGCAGCGAGACCAGTGTGATGGGCGAAAGCGGAGAGTTCAAAATGATTCTGGTGGTCAGAACAGATCTGAAAATGGGCAAAGGTAAAGTGGCAGCGCAGTGCTCTCACGCGGCCGTGTCAGCCTACAAACAGGTCCAGCGGCGAAACCCAGAGCTCCTGAAGCAGTGGGAGAACAGCGGACAACCCAAAGTGGTGGTTAAAGCTCCAGACGAGGATTGTCTACTGGATCTGCTGGCCCACGCCAAAGAGGTCGGGCTGCCCGTTAGTTTAATCCAAGATGCTGGAAGAACCCAAATTGCTCCCGGGTCAAGGACAGTTCTTGGCATAGGACCCGGACAGGCTGACCTAATTGATAAAGTGACTGGACATCTTAAATTATACTGAACAACAACACTAATGGACTAAGACAGAACTAAACTAGGACCTGCTCTTAGTTTTTACATGATTATAAAGATTGGATAAATGGAATTAAGTGGATTAAAATGACACTTTGATTTACAGGTTTAAGCATTCaagtaaaactattttaattcaaAGGTTTTTTTTGTAAGATTATGAATGAAATTGCATTATTTGGGAATCAAATGTGAATCAACCCCTTATATTCAATGCAAtaagacattttttttgttaaacttggGTGCAAATTGACCTGTTTTGTTCCCTGATGATAAGATCAATTGAGTCAGCAGATTTTAAACACTGGGATTATCTGCTTTTATTGAAGTTAAATAGAAGCATTAcagtgtaaaataaacattttcactcAAATATGAAAA
>TCONS_00004219
TTGTTCTTCTTCAGACATGAGGCTGGACTCTCTGTACGGGCCGTTCGGTCTGGGTGTTCTGGCTGGTCTGGGCTGCGGGCTCTGTGTCGGATGGCACCTCAGTGGGCGTTTTGGCAGATCGTCCCGCAGCATGATGACAGCTTTAGGGAACAGCGCCAGCAATGGCAGCGAGACCAGTGTGATGGGCGAAAGCGGAGAGTTCAAAATGATTCTGGTGGTCAGAACAGATCTGAAAATGGGCAAAGGTAAAGTGGCAGCGCAGTGCTCTCACGCGGCCGTGTCAGCCTACAAACAGGTCCAGCGGCGAAACCCAGAGCTCCTGAAGCAGTGGGAGAACAGCGGACAACCCAAAGTGGTGGTTAAAGCTCCAGACGAGGATTGTCTACTGGATCTGCTGGCCCACGCCAAAGAGGTCGGGCTGCCCGTTAGTTTAATCCAAGATGCTGGAAGAACCCAAATTGCTCCCGGGTCAAGGACAGTTCTTGGCATAGGACCCGGACAGGCTGACCTAATTGATAAAGTGACTGGACATCTTAAATTATACTGAACAACAACACTAATGGACTAAGACAGAACTAAACTAGGACCTGCTCTTAGTTTTTACATGATTATAAAGATTGGATAAATGGAATTAAGTGGATTAAAATGACACTTTGATTTACAGGTTTAAGCATTCaagtaaaactattttaattcaaAGGTTTTTTTTGTAAGATTATGAATGAAATTGCATTATTTGGGAATCAAATGTGAATCAACCCCTTATATTCAATGCAAtaagacattttttttgttaaacttggGTGCAAATTGACCTGTTTTGTTCCCTGATGATAAGATCAATTGAGTCAGCAGATTTTAAACACTGGGATTATCTGCTTTTATTGAAGTTAAATAGAAGCATTAcagtgtaaaataaacattttcactc

Function

symbol description
ptrh2 Predicted to enable aminoacyl-tRNA hydrolase activity. Predicted to be involved in negative regulation of anoikis and positive regulation of anoikis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol and mitochondrion. Orthologous to human PTRH2 (peptidyl-tRNA hydrolase 2).

GO:

id name namespace
GO:2000210 positive regulation of anoikis biological_process
GO:2000811 negative regulation of anoikis biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-163 Predicted to enable aminoacyl-tRNA hydrolase activity. Predicted to be involved in negative regulation of anoikis and positive regulation of anoikis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol and mitochondrion. Orthologous to human PTRH2 (peptidyl-tRNA hydrolase 2).

Ensembl:

ensembl_id ENSDARG00000077339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004218 False 1034 mRNA 0.44 2 28306749 28309317
TCONS_00004219 True 931 mRNA 0.44 1 28308376 28309306

Neighbor

gene id symbol gene type direction distance location
XLOC_002196 CU207388.1 coding upstream 53954 28252678 ~ 28252795 (+)
XLOC_002195 NA coding upstream 60329 28203764 ~ 28246420 (+)
XLOC_002194 rnft1 coding upstream 137580 28160265 ~ 28169169 (+)
XLOC_002193 NA coding upstream 1107767 27169126 ~ 27198982 (+)
XLOC_002192 cxadr coding upstream 1148509 27096043 ~ 27158240 (+)
XLOC_002198 si:ch211-222e20.4 coding downstream 118905 28428222 ~ 28431809 (+)
XLOC_002199 NA coding downstream 133592 28442909 ~ 28455085 (+)
XLOC_002200 cblb coding downstream 278129 28587446 ~ 28733002 (+)
XLOC_002201 NA coding downstream 781920 29091237 ~ 29091601 (+)
XLOC_002202 picalma coding downstream 828165 29137482 ~ 29225165 (+)
XLOC_002190 NA non-coding upstream 1242344 27061761 ~ 27064405 (+)
XLOC_002181 NA non-coding upstream 1423610 26882702 ~ 26883139 (+)
XLOC_002205 FP102896.1 non-coding downstream 1023742 29333059 ~ 29333175 (+)
XLOC_002207 BX470178.1 non-coding downstream 1164025 29473342 ~ 29473456 (+)
XLOC_002212 BX120005.5 non-coding downstream 1541255 29850572 ~ 29850667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_13435609_13438459 PTRH2 coding CI01000304 null 13435507 ~ 13438730 (+)