XLOC_002199


Basic Information

Item Value
gene id XLOC_002199
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28442909 ~ 28455085 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005907
GAAGTTGGCCAGCTCAGAGTCAAGAGAGCAGAGCAGATGAACACAGCTGTCATTAGTGCTGTTCAGTGGCTTCAGGGACAGACCTGGACATTAGATTCATCAAGGTAAGATAATGGTCAACAAACAGACAGTTCAGAATCACTAATGAACAGCAAAATCACCTGCGACTTGGAGATTCAGAGATGAGCTTTCGTCCACTGACGGAGGTGGAATTACTATTGTTGTTTTACAGCTGTATTTACCAGAGTGACCAGGCTGAACATTTTTGATCTCTAATCTAATAGGCTTACTGGTTAATGTAAAATGAGGAAAGCAGTATTTTAAGGGAGATACAAGGGAGTTGGACATATCAATGCTCCATGTACAAATAAAATTGCTACTGGTTGTATTGATGCTCCACTCTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005907 True 405 lncRNA 0.41 2 28442909 28455085

Neighbor

gene id symbol gene type direction distance location
XLOC_002198 si:ch211-222e20.4 coding upstream 11100 28428222 ~ 28431809 (+)
XLOC_002197 ptrh2 coding upstream 133592 28306749 ~ 28309317 (+)
XLOC_002196 CU207388.1 coding upstream 190114 28252678 ~ 28252795 (+)
XLOC_002195 NA coding upstream 196489 28203764 ~ 28246420 (+)
XLOC_002194 rnft1 coding upstream 273740 28160265 ~ 28169169 (+)
XLOC_002200 cblb coding downstream 132361 28587446 ~ 28733002 (+)
XLOC_002201 NA coding downstream 636152 29091237 ~ 29091601 (+)
XLOC_002202 picalma coding downstream 682397 29137482 ~ 29225165 (+)
XLOC_002203 sytl2a coding downstream 804797 29259882 ~ 29264023 (+)
XLOC_002204 crebzf coding downstream 810378 29265463 ~ 29268723 (+)
XLOC_002193 NA non-coding upstream 1243927 27169126 ~ 27198982 (+)
XLOC_002190 NA non-coding upstream 1378504 27061761 ~ 27064405 (+)
XLOC_002181 NA non-coding upstream 1559770 26882702 ~ 26883139 (+)
XLOC_002205 FP102896.1 non-coding downstream 877974 29333059 ~ 29333175 (+)
XLOC_002207 BX470178.1 non-coding downstream 1018257 29473342 ~ 29473456 (+)
XLOC_002212 BX120005.5 non-coding downstream 1395487 29850572 ~ 29850667 (+)
XLOC_002213 BX120005.4 non-coding downstream 1395915 29851000 ~ 29851095 (+)

Expression


Co-expression Network