XLOC_002198 (si:ch211-222e20.4)


Basic Information

Item Value
gene id XLOC_002198
gene name si:ch211-222e20.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28428222 ~ 28431809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004220
CGGACTGAATGCCATTTACTGTTTATGCTGCAGGTTATGCTCTGCAAGTGCGTTTATGTTATAGAAATCCGGGgagcccaaactttttcgtatgaagtGCCAAAAATCATTGAGAACTGTGGgtcaaagATTGTGGGTGGTCACATGGATAGGAAGTGACAGGAACTTGAGCGTACGTGTGCAAAACAGTCACAGACCCTGAGCACATCAACATGGTTTTGAAACGGATTACAGACTATCTTTTGTTTTGGACTTTTATTCATCTTCCAAATACAGATGCAAAGAAAGTTATCAAAGCAGTGGAAGGAGCCACTGTCCATCTGCCCTGCCATTTACCTCCTGTAGAGAGTCAACAAGTTACAGTAGAGTGGACCATAAATACACACAGTCTGTCCCTGAAGCCACTGAACAGCACTAATGACAGCTGTGTTCATCTGCTCTGCTCTCTGGACTCTGATCTGGCCAACTTCACCTGGAGCCGAGGAGGTCAGATGTTACCACATGTGTCCACATTTAATGCTGATAATAGTGAACTGCAGCTGTGCAAACCTGACTGGAGTGAAGGAGACACAATCACCTGTCACGTCAACTACTCAGGAACCCAAACTCAAAAAAGCATCAAATTCAGCAGATCAGAAAATGCTAACAGAGGATACCAGGATTTTCCAGCTGTTTTTGTGACGTTGATGAGCATCTTTATCAGTTTCATCTAAATATTGTTCTGCATTTTACAATACAAAACTCAGACCTGCCATCCTGAACCATCAACACCGGAAGAAGGAAGAGAGGACACACAACACAATAAGATCCCTCTTTGTCCTTTAGCAAAATACTTTTAACTTACTACTTTAAATTTTACTATGACCCTTTAGActataatttctttaaaattgGCTGTTTTGTGTTGAGTCATTTCCAAAGAATTACATTGATTTTCATTGACTTTGCTGTTAAAATCTACTCAGTGATCATAAATAACTTCTGTTATATGTAATGAGTATCATTAAATTATGAGGATTTGTTGTTTCACAGATGAGAAACTTTAGAATAAAATGAAAGCTTCATGGTTCCTTACAAGCATCCTAAAataaaagttctgtcatcatgtaCACACTTCATAGTAAGTTTCCATTTGTTAGTCAGCttttaataactgtgatgttCATTTCTTAGTTGATGCTTAATACCAAAAAAGTTcagtggtattttttttttaattaacattaacataaTTTCTTTGACAAATGTAGCTGTTTCTCACTGTTTATGGTGTTAAATGATGAGACCTTACTGTAAAGTTCACTTTTGTACTTTATTTAACTTtgcttaaaatctttttaaaaatttagtgTATGCACAATGAAAGATttagattttgttgttgttatcactt
>TCONS_00004221
GACCCTGAGCACATCAACATGGTTTTGAAACGGATTACAGACTATCTTTTGTTTTGGACTTTTATTCATCTTCCAAATACAGATGCAAAGAAAGTTATCAAAGCAGTGGAAGGAGCCACTGTCCATCTGCCCTGCCATTTACCTCCTGTAGAGAGTCAACAAGTTACAGTAGAGTGGACCATAAATACACACAGTAACAGTTCTATTTGTGCATGGATCACTGATAATAACTCTGTACACCCCTTAAAAGATTGCTTTCCTCATTTTACATTAACCAGTAAGCCTATTAGATTAGAGATAAAAAATGTTCAGCCTGGTGACTCTGGTAAATACAGCTGTAAAACAACAAGAGTAATTCCACCTCCGTCAGTGGAAGAAAGCTCATCTGTGATTCTCCGAGTCACAGATGATTTTGCTGTTCATTAGTGATTCTGAATTGTCTGTATGTTGAATATCATCTTACTTTGATGAATCTAATGTCCAGGTCTGTCCCTGAAGCCACTGAACAGCACTAATGACAGCTGTGTTCATCTGCTCTGCTCTCTGGACTCTGATCTGGCCAACTTCACCTGGAGCCGAGGAGGTCAGATGTTACCACATGTGTCCACATTTAATGCTGATAATAGTGAACTGCAGCTGTGCAAACCTGACTGGAGTGAAGGAGACACAATCACCTGTCACGTCAACTACTCAGGAACCCAAACTCAAAAAAGCATCAAATTCAGCAGATCAGAAAATGCTAACAGAGGATACCAGGATTTTCCAGCTGTTTT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-60 No description available

Ensembl:

ensembl_id ENSDARG00000092578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004220 False 1393 mRNA 0.37 7 28428222 28431809
TCONS_00004221 True 773 lncRNA 0.41 3 28429557 28430772

Neighbor

gene id symbol gene type direction distance location
XLOC_002197 ptrh2 coding upstream 118905 28306749 ~ 28309317 (+)
XLOC_002196 CU207388.1 coding upstream 175427 28252678 ~ 28252795 (+)
XLOC_002195 NA coding upstream 181802 28203764 ~ 28246420 (+)
XLOC_002194 rnft1 coding upstream 259053 28160265 ~ 28169169 (+)
XLOC_002193 NA coding upstream 1229240 27169126 ~ 27198982 (+)
XLOC_002199 NA coding downstream 11100 28442909 ~ 28455085 (+)
XLOC_002200 cblb coding downstream 155637 28587446 ~ 28733002 (+)
XLOC_002201 NA coding downstream 659428 29091237 ~ 29091601 (+)
XLOC_002202 picalma coding downstream 705673 29137482 ~ 29225165 (+)
XLOC_002203 sytl2a coding downstream 828073 29259882 ~ 29264023 (+)
XLOC_002190 NA non-coding upstream 1363817 27061761 ~ 27064405 (+)
XLOC_002181 NA non-coding upstream 1545083 26882702 ~ 26883139 (+)
XLOC_002205 FP102896.1 non-coding downstream 901250 29333059 ~ 29333175 (+)
XLOC_002207 BX470178.1 non-coding downstream 1041533 29473342 ~ 29473456 (+)
XLOC_002212 BX120005.5 non-coding downstream 1418763 29850572 ~ 29850667 (+)

Expression


Co-expression Network