RNA id: TCONS_00004220


Basic Information

Item Value
RNA id TCONS_00004220
length 1393
RNA type mRNA
GC content 0.37
exon number 7
gene id XLOC_002198
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28428222 ~ 28431809 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGACTGAATGCCATTTACTGTTTATGCTGCAGGTTATGCTCTGCAAGTGCGTTTATGTTATAGAAATCCGGGgagcccaaactttttcgtatgaagtGCCAAAAATCATTGAGAACTGTGGgtcaaagATTGTGGGTGGTCACATGGATAGGAAGTGACAGGAACTTGAGCGTACGTGTGCAAAACAGTCACAGACCCTGAGCACATCAACATGGTTTTGAAACGGATTACAGACTATCTTTTGTTTTGGACTTTTATTCATCTTCCAAATACAGATGCAAAGAAAGTTATCAAAGCAGTGGAAGGAGCCACTGTCCATCTGCCCTGCCATTTACCTCCTGTAGAGAGTCAACAAGTTACAGTAGAGTGGACCATAAATACACACAGTCTGTCCCTGAAGCCACTGAACAGCACTAATGACAGCTGTGTTCATCTGCTCTGCTCTCTGGACTCTGATCTGGCCAACTTCACCTGGAGCCGAGGAGGTCAGATGTTACCACATGTGTCCACATTTAATGCTGATAATAGTGAACTGCAGCTGTGCAAACCTGACTGGAGTGAAGGAGACACAATCACCTGTCACGTCAACTACTCAGGAACCCAAACTCAAAAAAGCATCAAATTCAGCAGATCAGAAAATGCTAACAGAGGATACCAGGATTTTCCAGCTGTTTTTGTGACGTTGATGAGCATCTTTATCAGTTTCATCTAAATATTGTTCTGCATTTTACAATACAAAACTCAGACCTGCCATCCTGAACCATCAACACCGGAAGAAGGAAGAGAGGACACACAACACAATAAGATCCCTCTTTGTCCTTTAGCAAAATACTTTTAACTTACTACTTTAAATTTTACTATGACCCTTTAGActataatttctttaaaattgGCTGTTTTGTGTTGAGTCATTTCCAAAGAATTACATTGATTTTCATTGACTTTGCTGTTAAAATCTACTCAGTGATCATAAATAACTTCTGTTATATGTAATGAGTATCATTAAATTATGAGGATTTGTTGTTTCACAGATGAGAAACTTTAGAATAAAATGAAAGCTTCATGGTTCCTTACAAGCATCCTAAAataaaagttctgtcatcatgtaCACACTTCATAGTAAGTTTCCATTTGTTAGTCAGCttttaataactgtgatgttCATTTCTTAGTTGATGCTTAATACCAAAAAAGTTcagtggtattttttttttaattaacattaacataaTTTCTTTGACAAATGTAGCTGTTTCTCACTGTTTATGGTGTTAAATGATGAGACCTTACTGTAAAGTTCACTTTTGTACTTTATTTAACTTtgcttaaaatctttttaaaaatttagtgTATGCACAATGAAAGATttagattttgttgttgttatcactt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-60 No description available

Ensembl:

ensembl_id ENSDART00000135003

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005905 lncRNA upstream 181802 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00005906 lncRNA upstream 181802 28233240 ~ 28246420 (+) True XLOC_002195
TCONS_00005904 lncRNA upstream 1229240 27169126 ~ 27198982 (+) True XLOC_002193
TCONS_00005902 lncRNA upstream 1363817 27061761 ~ 27064405 (+) False XLOC_002190
TCONS_00005907 lncRNA downstream 11100 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00005718 lncRNA downstream 659428 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00004241 lncRNA downstream 1349828 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005908 lncRNA downstream 1461817 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA downstream 1464244 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00004218 mRNA upstream 118905 28306749 ~ 28309317 (+) False XLOC_002197
TCONS_00004219 mRNA upstream 118916 28308376 ~ 28309306 (+) True XLOC_002197
TCONS_00004215 mRNA upstream 259053 28160265 ~ 28169169 (+) False XLOC_002194
TCONS_00004213 mRNA upstream 1269982 27096043 ~ 27158240 (+) False XLOC_002192
TCONS_00004214 mRNA upstream 1269984 27096116 ~ 27158238 (+) True XLOC_002192
TCONS_00004222 mRNA downstream 155637 28587446 ~ 28733002 (+) False XLOC_002200
TCONS_00004223 mRNA downstream 155692 28587501 ~ 28730385 (+) True XLOC_002200
TCONS_00004224 mRNA downstream 705673 29137482 ~ 29223763 (+) False XLOC_002202
TCONS_00004225 mRNA downstream 706212 29138021 ~ 29225165 (+) False XLOC_002202
TCONS_00004226 mRNA downstream 706254 29138063 ~ 29206191 (+) False XLOC_002202
TCONS_00004217 other upstream 175427 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004216 other upstream 265975 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004211 other upstream 1364784 27063354 ~ 27063438 (+) True XLOC_002190
TCONS_00004210 other upstream 1364965 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004170 other upstream 2121879 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004234 other downstream 834982 29266791 ~ 29268413 (+) True XLOC_002204
TCONS_00004235 other downstream 901250 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004237 other downstream 1041533 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004248 other downstream 1418763 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004249 other downstream 1419191 29851000 ~ 29851095 (+) True XLOC_002213

Expression Profile

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