RNA id: TCONS_00004248


Basic Information

Item Value
RNA id TCONS_00004248
length 96
RNA type snoRNA
GC content 0.45
exon number 1
gene id XLOC_002212
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29850572 ~ 29850667 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCTATGATGAAGTTTATTCCTTGCCATTCGTAGTTTCCACCAGAGGTTGAAAAACCAAAGATGGCCCAAGTACCTTCCTTGGATGTCTGAGCGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000117710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004241 lncRNA upstream 64668 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005718 lncRNA upstream 758971 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00005907 lncRNA upstream 1395487 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00004221 lncRNA upstream 1419800 28429557 ~ 28430772 (+) True XLOC_002198
TCONS_00005905 lncRNA upstream 1604152 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00005908 lncRNA downstream 42959 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA downstream 45386 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00005910 lncRNA downstream 55559 29906226 ~ 29911581 (+) False XLOC_002215
TCONS_00004260 lncRNA downstream 647414 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00004263 lncRNA downstream 1127719 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00004243 mRNA upstream 2059 29840725 ~ 29848513 (+) True XLOC_002210
TCONS_00004242 mRNA upstream 32983 29816681 ~ 29817589 (+) True XLOC_002209
TCONS_00004239 mRNA upstream 59106 29770120 ~ 29791466 (+) False XLOC_002208
TCONS_00004240 mRNA upstream 59799 29770242 ~ 29790773 (+) False XLOC_002208
TCONS_00004236 mRNA upstream 145063 29431529 ~ 29705509 (+) False XLOC_002206
TCONS_00004251 mRNA downstream 2010 29852677 ~ 29853710 (+) False XLOC_002211
TCONS_00004253 mRNA downstream 4546 29855213 ~ 29887864 (+) False XLOC_002211
TCONS_00004252 mRNA downstream 4546 29855213 ~ 29887864 (+) False XLOC_002211
TCONS_00004254 mRNA downstream 4614 29855281 ~ 29870660 (+) True XLOC_002211
TCONS_00004256 mRNA downstream 112851 29963518 ~ 30576089 (+) False XLOC_002216
TCONS_00004237 other upstream 377116 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004235 other upstream 517397 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004234 other upstream 582159 29266791 ~ 29268413 (+) True XLOC_002204
TCONS_00004217 other upstream 1597777 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004216 other upstream 1688325 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004249 other downstream 333 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004250 other downstream 1480 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004255 other downstream 59955 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004261 other downstream 885481 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004262 other downstream 909262 30759929 ~ 30760044 (+) True XLOC_002218

Expression Profile

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