RNA id: TCONS_00004253


Basic Information

Item Value
RNA id TCONS_00004253
length 3115
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_002211
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29849497 ~ 29887864 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATCATGGCGTCTAGGTTTCCACGACAACGGTTTAACAAACTAAACATTCCCTGACAAACAAATCGTGTTTGTTACCAGTAAATCTGGAAGAGCAGACCAATGGGTCTGTGTAAAAGGTAATGTTTCGATGTTGTAGAagtaattaaagtaatatttcgACCGTTTACGATATCTTCGCGCAACATTATAACGTAAGTTCAAGCGGAGATGACCTGAAACacGTGACGACTTTTTATGTCTAGCAAGCAACAAACCCATAAGTTCAACCAGCCTGAGGCGTTGGCTGAGTCAAAAGTAAAATTCAGCACGCACGATGACTGTAGACAAACGGATAAAGTGATGTGGGACTCGTTAGAGTCAGATACAGAGAGTCTGGTGCAGGAGAAAGAGTACCAGCGAAAGCTTCAGATGCGCATTAACCACATCTCTGCGGAGACCTCCATGTGTGCTGAGACTGACAGCGAGGAGCTGGAGCAGTTTGATGTTTATGACAGTCTGGAACTGAAACCAACACAGCTGAAAGGACTACTGAGACAAACTCCCCCTGATGATGAATACGCTGACTTGCGCTATGACCCAAATTGGAGAAAGAATCTGGAAGGGGCTCCGTTTCTCAAGCATCTAAACACAGGCCTTTCTCTTGACTCATCTGAGGAGTCTGAAGATAGTTTCCAACCCTTGGAGAACAGGGCTCTAGGGAGCAGACGAGAATATGCCGTTGTCAGTAGCCCATCGGTGGTTCAGACAGACAATGGTTTATCCCCAGCACAATCATCTCCTTTCCATCTGCACCCACAACGGGACGACAGTTTTGACCCTCCTGAATCTAAAAGTTCTTGCATGTCCACACCACAAAATCCCAGAGAGAATCCCCTAATGAATGTCAGATCAGTTTCTCCACAGAAAAGAATCTCTCGACATTCCTCTGATCCAACGCCAGTCAGAGCTAGGGAAGATATTGTGGAGCGCAACAAAGCAACTCTTGGCATCAATACACAAAAGAAGGGGTCTTACCTGAAAGCTCATCAGCAGAAAGATAAACCAGATGAGACAAAGCAACCCAGGCGAACCTCTTACGAGACTATCAGCACTCGTAGCCCGGAGAGTCAAGACAATGTCCAGGATCCCGAGCTGATGTGGctccaaaaaacacaaaaactgaaGCAAAGCCATAAAGAACGGAAGGTACCAAAAAAGAAGGAGCGAACCAGCAACCACCCAGATCAGCTCAAGCCTCCAGTTCCTGACTCTAAAGCCAAAGCTCAGGTTAAACCCCTTACAGAAATTAATGACCAGACAAAGGAAACTCCAACAGCCTACAATCATGACCCACCAAAACACCAGTCTGGACTTCCATCTCACACTAATGCTCCACCAACCGTCAACTTTAACATAAACCTCCACCCTTCTGCCAGTAATGCACAACCACTCAATATTTCTCAAAAAGAGACTATTTTTACTCTTGTTTCTCAAGCACTGCAATGGGATCTGTTTAACCCACCATTTTCACAAGCAGACAATCAAACCACTGTACTAACTAATTCAGTAGAGCAGATGCGATTGGCTCCAAAAGCAGTTGCGTCTTCTCCAGCTGCTCAATCTGGTTTGGTGGTCCAGGCTGTGGACAGAAATGTTTTTCGGAGGCGTGCTGGGAAACCTCTTCTTAATGAGAATGCATCATTCAGGAATCATAACACACTCAGGATACCAATGCTAAAATTGCCCACATCCCCTGAAGCGGAGGCCTTCCACTTTCCACCTGAGCTTTTGGCCAGTGATGAGGAGAGTGTGGGATATTCTGTGCCCTCGACACAGATCTCTGGTTCATACGCAGTGCTGCCCCCTATAGCCCGAGCGAATGGCAGCGACACAGATCTCAGCTCAGATAGAGACCAGCAGCTGAATCCAATCTACAGAAGCGGCTCAGAAGGTTACCTTACACAAATGGAGAAACACAGACAACTGAAGGCTAAAGCAAATTATAAGGCTTATACACTGAAGGACTACAAGGACATGAAACAGGAGGTGAAGCTTGGAGGTCTTGGACCAACAAATATGGTACCAGAAGCTGTGGCAGAGAAAATTAGACGACAGAAGCTGTATTCAAATGTGATCCGCGAACAGAACAAGAAGATAAGTAGGATTCCCTCTCTGTCAGCCAAGGACCCAGTGGGCAGCGACGACAAGGACGCGGTTCCCAGGAGGAAGGCTTTAGAGTATGCCAAAACTATTGCAAAGCCCAAAGCCCCCCCAAAGTCAAAGGACAGGCCTGGAGAACATAATATGAACACCCAACCTCAATATCTGCAACAAACTGACCCAATCCATCTGGCCACTCTGGAGATGCTGAGACGACACGAGGAAGAGAAACGTGCCGTGGCTCGCTTTAGAACCATTCATGCGGTTTAATACTTAAAAGCCACATGCGTAGATGAGTTATGCTAATAGCACTTCCTAATTTTCCCTTGCTTTAATTTAGAAtttgtgtgttaatttaattttgtgtgtatttatgcatACGGTAATGCTGTTTATTTGCAAAGCACTGGAAGTGGAACAGGTGTGTAACACATAATCCACTGCAAACTAATTCCCAAAACCATTTTTTGGATATAAAGAAATCTGCCGTGGGGTTTTGTTGCCTGGCTTTGCATTATCCTGCTATTTCCCTCTTGTTTTCAATAGGTCTGTGCACAAGAGCACCAATCTCTTCAAGCACACCTGGATGCACCGTTAACCCAGTGTAACGTGCCGTTTTCTGTCAGTTCCCGGCTATTAGTCTGATTATATCCACTTTTGCCTGCCCTTTTCTTTCACCAAGAGAAAAAAATAGGTCAAATAAGGATGACACTTTGAAGCCTCCCTTATTAGAGCCCGCAAacttgttttctgtattttaaagtgataaTTTTCCCCCTAAAACAAGCTCAAGCACCTATTTCTTTAATGGAAGCTTTAGATCGTTATCAAAGAGCTATTTACTcctatgtaatattttaattagattATAGCCTCTATTTAACCCATCATGTCTGCTTTGATACTCTGTGTTTTCAGTGTTAAGCCTCAGAGGCGAGGCTAATAAATGCTGGACCTTTTGAATTAATGAGAAA

Function

GO:

id name namespace
GO:0006986 response to unfolded protein biological_process
GO:0048260 positive regulation of receptor-mediated endocytosis biological_process
GO:1902946 protein localization to early endosome biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0031101 fin regeneration biological_process
GO:0034620 cellular response to unfolded protein biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0042026 protein refolding biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0044183 protein folding chaperone molecular_function
GO:0051787 misfolded protein binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-471 Predicted to be involved in axoneme assembly. Orthologous to human JHY (junctional cadherin complex regulator).

Ensembl:

ensembl_id ENSDART00000127723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004241 lncRNA upstream 69309 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005718 lncRNA upstream 763612 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00005907 lncRNA upstream 1400128 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00004221 lncRNA upstream 1424441 28429557 ~ 28430772 (+) True XLOC_002198
TCONS_00005906 lncRNA upstream 1608793 28233240 ~ 28246420 (+) True XLOC_002195
TCONS_00005908 lncRNA downstream 5762 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA downstream 8189 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00005910 lncRNA downstream 18362 29906226 ~ 29911581 (+) False XLOC_002215
TCONS_00004260 lncRNA downstream 610217 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00004263 lncRNA downstream 1090522 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00004244 mRNA upstream 1385 29849497 ~ 29853828 (+) False XLOC_002211
TCONS_00004251 mRNA upstream 1503 29852677 ~ 29853710 (+) False XLOC_002211
TCONS_00004247 mRNA upstream 1797 29850330 ~ 29853416 (+) False XLOC_002211
TCONS_00004245 mRNA upstream 3895 29849543 ~ 29851318 (+) False XLOC_002211
TCONS_00004243 mRNA upstream 6700 29840725 ~ 29848513 (+) True XLOC_002210
TCONS_00004256 mRNA downstream 75654 29963518 ~ 30576089 (+) False XLOC_002216
TCONS_00004257 mRNA downstream 75752 29963616 ~ 30579384 (+) False XLOC_002216
TCONS_00004259 mRNA downstream 75822 29963686 ~ 30589172 (+) False XLOC_002216
TCONS_00004258 mRNA downstream 75822 29963686 ~ 30589172 (+) False XLOC_002216
TCONS_00004264 mRNA downstream 1334569 31222433 ~ 31229732 (+) False XLOC_002220
TCONS_00004250 other upstream 2971 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004249 other upstream 4118 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004248 other upstream 4546 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004237 other upstream 381757 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004235 other upstream 522038 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004255 other downstream 22758 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004261 other downstream 848284 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004262 other downstream 872065 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004273 other downstream 1804798 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004283 other downstream 2507916 32395780 ~ 32395896 (+) True XLOC_002235

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_14356867_14373980.mRNA True 3232 mRNA 0.45 8 CI01000304 14356586 ~ 14374666 (+)