XLOC_002220 (tmem218)


Basic Information

Item Value
gene id XLOC_002220
gene name tmem218
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31222433 ~ 31230014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004264
aaatttcaaTAAGTTCAAGAAGTAATACATATAAAGTAAagcttaaaacaaaataattaagagTGCAAGTAATTCAAAATGAAGTACTGATGTAGCAGGGGAAAGAAACAAGATGTTTTCCCTGACCCATAATAAGTAATCACATGAACTACAAGTCCCAGCATGCTATTCGGAAAATGCCAAAACCTGATTGGACTGTTTGAGACACAGGAAGTGTGGAGGTAAAGTAAACAGAAGCGGCATTGTTTCCATGGAAATATTTTATGCTTTCTGCCGTGTGTATTTTGTGTAAATCAGCTAATTATTCAGAATGACCTAGCTGGTTTCAGCGCTCGGTTGTTTTGTGAGGTAAATTCACTAACTAATTAGCGTATCCGTGAAACGTTAGCCATGGGATTAGTTTGCTGGCTTTAGCATGTAATGTCGATCAACTGCGGGGTCCCCATCGTTTACTTGTTAACATGGTAGTTAAAATGAGTAAAAATCAGTGTAGTAATAGTAAATATCTTGCAGATAGACGCACGTAACTTAACGTTAGATGCGCCATTATGTCCACCGGCTTCATACTCTATGCTTACAAACTTAAATAGCAGATTTAGCGCGTGCTTTTATCATATGACACTGTCTTAACTGTTACAAACGTTAGAAATCTTCGTCTGGTCCAGGCACTGGCTGTGTAAGAGGTGAGGATGGCGGATGTGGTGCTCGGTGTTGGGACAGGTGTGTTTATCATCACTTTAATCTGGATACTGACTCTCGCGCTCACTATAATTCTGTCGCGCGCCACCGGCCCAACAAAGTTGGGTATTATCCCTGTAGTCCTTCTGGCACTCATAATCACACTGGTTTTAGTGTTTTTCCCGCGCGCAGCTGAAGTTCCCGCCCCTCAGAGAGCAGCTCAGATCGTGGATATGTTCTTCATCGGTCGCTATGTGCTCCTGTCCTTGGTGAGCTTGGTGTTTTTGGCAGCCCTGTTCATGTTGCTGCCCTTACATTTCCTGGAGCCCATCTATGCCAAACCCCTGAGAACACACTAG
>TCONS_00004265
AAAGTAAACAGAAGCGGCATTGTTTCCATGGAAATATTTTATGCTTTCTGCCGTGTGTATTTTGTGTAAATCAGCTAATTATTCAGAATGACCTAGCTGGTTTCAGCGCTCGGTTGTTTTGTGAGGCACTGGCTGTGTAAGAGGTGAGGATGGCGGATGTGGTGCTCGGTGTTGGGACAGGTGTGTTTATCATCACTTTAATCTGGATACTGACTCTCGCGCTCACTATAATTCTGTCGCGCGCCACCGGCCCAACAAAGTTGGGTATTATCCCTGTAGTCCTTCTGGCACTCATAATCACACTGGTTTTAGTGTTTTTCCCGCGCGCAGCTGAAGTTCCCGCCCCTCAGAGAGCAGCTCAGATCGTGGATATGTTCTTCATCGGTCGCTATGTGCTCCTGTCCTTGGTGAGCTTGGTGTTTTTGGCAGCCCTGTTCATGTTGCTGCCCTTACATTTCCTGGAGCCCATCTATGCCAAACCCCTGAGAACACACTAGACCACAAGGCTCTCTGTGCCAAACTCCTACAGATATCCCAGAGCGGGGCAGCCAACCTGGCAGCGTCCTCCATCAACGAGCCCTGCTTGAGATGAGAGGACAGCAGAAGGTTCCAGGGCTTTTGTCTTCCTGGCCAAATCAGAGATGTCCACATCTTTCAGAGAGACCCGCACAGAGCATGTGCTTCACCAGTGTTTTCAGAAGGGCGCTGGTGGGGTGTTTCAAGGTTTTCATGTCCAGTTTCAAAGTTGAttgttgaataaatatatatgtagtaTTCTA
>TCONS_00004266
TTCAGCGCTCGGTTGTTTTGTGAGGCACTGGCTGTGTAAGAGGTGAGGATGGCGGATGTGGTGCTCGGTGTTGGGACAGGTGTGTTTATCATCACTTTAATCTGGATACTGACTCTCGCGCTCACTATAATTCTGTCGCGCGCCACCGGCCCAACAAAGTTGGGTATTATCCCTGTAGTCCTTCTGGCACTCATAATCACACTGGTTTTAGTGTTTTTCCCGCGCGCAGCTGAAGTTCCCGCCCCTCAGAGAGCAGCTCAGATCGTGGATATGTTCTTCATCGGTCGCTATGTGCTCCTGTCCTTGATATCCCAGAGCGGGGCAGCCAACCTGGCAGCGTCCTCCATCAACGAGCCCTGCTTGAGATGAGAGGACAGCAGAAGGTTCCAGGGCTTTTGTCTTCCTGGCCAAATCAGAGATGTCCACATCTTTCAGAGAGACCCGCACAGAGCATGTGCTTCACCAGTGTTTTCAGAAGGGCGCTGGTGGGGTGTTTCAAGGTTTTCATGTCCAGTTTCAAAGTTGAttgttgaataaatatatatgtagtaTTCTA

Function

symbol description
tmem218 Predicted to be located in cilium and membrane. Predicted to be integral component of membrane. Orthologous to human TMEM218 (transmembrane protein 218).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0042995 cell projection cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1232 Predicted to be located in cilium and membrane. Predicted to be integral component of membrane. Orthologous to human TMEM218 (transmembrane protein 218).

Ensembl:

ensembl_id ENSDARG00000027129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004264 False 1037 mRNA 0.43 3 31222433 31229732
TCONS_00004265 False 779 mRNA 0.49 4 31222656 31230014
TCONS_00004266 True 556 mRNA 0.50 5 31222757 31230014

Neighbor

gene id symbol gene type direction distance location
XLOC_002219 CR925737.1 coding upstream 234329 30978386 ~ 30988104 (+)
XLOC_002218 CR925809.1 coding upstream 462389 30759929 ~ 30760044 (+)
XLOC_002217 BX957285.1 coding upstream 486165 30736148 ~ 30736268 (+)
XLOC_002216 ntm coding upstream 633261 29963518 ~ 30589172 (+)
XLOC_002215 NA coding upstream 1310737 29893626 ~ 29911696 (+)
XLOC_002221 robo4 coding downstream 14605 31244619 ~ 31284790 (+)
XLOC_002222 AL845320.2 coding downstream 114213 31344227 ~ 31345690 (+)
XLOC_002223 MSANTD2 coding downstream 394129 31624143 ~ 31634427 (+)
XLOC_002224 esama coding downstream 416006 31646020 ~ 31726486 (+)
XLOC_002225 BX571852.1 coding downstream 462648 31692662 ~ 31692776 (+)
XLOC_002214 BX120005.1 non-coding upstream 1370191 29852147 ~ 29852242 (+)
XLOC_002226 NA non-coding downstream 512984 31742998 ~ 31768953 (+)
XLOC_002228 NA non-coding downstream 639268 31869282 ~ 32041846 (+)
XLOC_002229 NA non-coding downstream 716823 31946837 ~ 31948544 (+)
XLOC_002234 NA non-coding downstream 1029729 32259743 ~ 32264298 (+)

Expression


Co-expression Network