XLOC_002229


Basic Information

Item Value
gene id XLOC_002229
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31946837 ~ 31948544 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005912
ATGTAGAGGACTTTATCCAATTGTAAAGTGACTTTATCTAGCATGTAAGTGAGTTTATCCATCATTTAAGTGGATTTGTCCAACAATTAAATGACTTTATCTATCATTTAAAATACTTCATTCAACATTTAGCCGACTTTGTCCAACATTTAAGTGATTTTATCCAGCATTTAAGTGATTCTATCCAACATGTAAGTCATTTTATCCAATAGGGAGGTGCCTTTATCCAACATTTAAGTCACTTTATCCAATATTTCAGTCGCTCTATCCAACATTTCACTCGCTTTATCTAACATTTAAGTCACTTTAGTCAACATTTAAGTCACTTTGTCCAACATTTAGTTCGCTTGATCCAATATTTAAGTCACTTTATCCAATATTTCCTTCACTTGATCCAATATTTAAGTCACTTTATCCAACATTCAAGTCACTTTATCTAACATTTCAGTCGCTTTATCCAACATTTCAGTCACTTTATCCAACATTTCAGTcactttatttaacatttaagtgATTTTATCCTAAATTTAAGtaactttaattaaaatttaagtaACCTTATCCAACAATTAAATGACTTTAAGTATCAAACACGTACTAGGTGACTTTATTCAACATTTAACCTACataaattattatacattatCTACATAAAATTGACTGAACTTTTCTTATAGCAACTAAACTAGACCACCAATGGAGTAGCATTTTGCAAGTTGCAAAAGTGCTTTACAGAACTTTCTCCAAGCTCATGGTCCATTGAGAAGCTAAATGATCTGTTTACCCAAAACCCTTCATGCAGAAATTCAAACGAACCCCATTGAACAAACAGTGAGATTAGAGGACTGTCTAGACTGCTCAAATTGTACTCTCTAACATTCGAATGAGAGATTTCAGCCCAAATGCTAGTTCTggttcaaatattatttttgtttttgttttttgttttagggTAAATTTTAATAGTAATTGATGCAATAATGTAATTATAAGCTTTTCAAACCCTGTTTAATGACTAAACTATATCCCAGCATTAACACCTAATAATAAGATAGTGTTTAAGTGTGGATAACTCAAGTGAAGAGACTCTTTCCATGATTTCTGCATGGCTGCTTCCTGCATCACTTAAGACTAAGAAGAAGAGATGGGCTCCCCCAATTTGCATTTCTCATCAGGGTCAGAAGCGCTTTAACATGCAGTGAATCTCTGATGTTGCTTTTggtttataataaaatgcatgaaaCAGCAGTGAAGATATTGAATACTAAAACATCATTACAGTCACATTAGCCAGTGCCACTAGAGAGTCTCTGCTGATGAGAAATAACACTGCAGGATGGAAATTATAATAATGGATTAAGAAGAGGTGCTGACAGTGTACCCTCTCCTCTGTCCCATCCTGAAGGTCGTTGCTGCCCTCAGACTCGTTTTGATATGCAACATCAGTTTTTATGTGCCGTTTAGAAAATGTGACAGACTGTGTACATGTGATTGATGTGTACAGCTTTAAAACCCAGCAGTTTGCATAAATGTTTctgtttattaaacagttttattttctcAGGTGCCTAGGAAGTCTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005912 True 1582 lncRNA 0.34 2 31946837 31948544

Neighbor

gene id symbol gene type direction distance location
XLOC_002227 foxo1b coding upstream 85363 31809226 ~ 31861474 (+)
XLOC_002226 NA coding upstream 177884 31742998 ~ 31768953 (+)
XLOC_002224 esama coding upstream 220351 31646020 ~ 31726486 (+)
XLOC_002225 BX571852.1 coding upstream 254061 31692662 ~ 31692776 (+)
XLOC_002223 MSANTD2 coding upstream 312410 31624143 ~ 31634427 (+)
XLOC_002230 si:ch211-266i6.3 coding downstream 102362 32050906 ~ 32058078 (+)
XLOC_002231 thap12a coding downstream 110148 32058692 ~ 32064405 (+)
XLOC_002232 si:dkey-250d21.1 coding downstream 117811 32066355 ~ 32072789 (+)
XLOC_002233 wnt11 coding downstream 155761 32104305 ~ 32123204 (+)
XLOC_002234 NA coding downstream 311199 32259743 ~ 32264298 (+)
XLOC_002219 CR925737.1 non-coding upstream 958733 30978386 ~ 30988104 (+)
XLOC_002218 CR925809.1 non-coding upstream 1186793 30759929 ~ 30760044 (+)
XLOC_002217 BX957285.1 non-coding upstream 1210569 30736148 ~ 30736268 (+)
XLOC_002235 CR388187.1 non-coding downstream 447236 32395780 ~ 32395896 (+)
XLOC_002237 NA non-coding downstream 635873 32584417 ~ 32592071 (+)
XLOC_002241 CU929186.1 non-coding downstream 1053775 33002319 ~ 33002433 (+)
XLOC_002243 NA non-coding downstream 1316837 33265381 ~ 33265687 (+)

Expression


Co-expression Network