RNA id: TCONS_00005912


Basic Information

Item Value
RNA id TCONS_00005912
length 1582
lncRNA type intronic
GC content 0.34
exon number 2
gene id XLOC_002229
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31946837 ~ 31948544 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTAGAGGACTTTATCCAATTGTAAAGTGACTTTATCTAGCATGTAAGTGAGTTTATCCATCATTTAAGTGGATTTGTCCAACAATTAAATGACTTTATCTATCATTTAAAATACTTCATTCAACATTTAGCCGACTTTGTCCAACATTTAAGTGATTTTATCCAGCATTTAAGTGATTCTATCCAACATGTAAGTCATTTTATCCAATAGGGAGGTGCCTTTATCCAACATTTAAGTCACTTTATCCAATATTTCAGTCGCTCTATCCAACATTTCACTCGCTTTATCTAACATTTAAGTCACTTTAGTCAACATTTAAGTCACTTTGTCCAACATTTAGTTCGCTTGATCCAATATTTAAGTCACTTTATCCAATATTTCCTTCACTTGATCCAATATTTAAGTCACTTTATCCAACATTCAAGTCACTTTATCTAACATTTCAGTCGCTTTATCCAACATTTCAGTCACTTTATCCAACATTTCAGTcactttatttaacatttaagtgATTTTATCCTAAATTTAAGtaactttaattaaaatttaagtaACCTTATCCAACAATTAAATGACTTTAAGTATCAAACACGTACTAGGTGACTTTATTCAACATTTAACCTACataaattattatacattatCTACATAAAATTGACTGAACTTTTCTTATAGCAACTAAACTAGACCACCAATGGAGTAGCATTTTGCAAGTTGCAAAAGTGCTTTACAGAACTTTCTCCAAGCTCATGGTCCATTGAGAAGCTAAATGATCTGTTTACCCAAAACCCTTCATGCAGAAATTCAAACGAACCCCATTGAACAAACAGTGAGATTAGAGGACTGTCTAGACTGCTCAAATTGTACTCTCTAACATTCGAATGAGAGATTTCAGCCCAAATGCTAGTTCTggttcaaatattatttttgtttttgttttttgttttagggTAAATTTTAATAGTAATTGATGCAATAATGTAATTATAAGCTTTTCAAACCCTGTTTAATGACTAAACTATATCCCAGCATTAACACCTAATAATAAGATAGTGTTTAAGTGTGGATAACTCAAGTGAAGAGACTCTTTCCATGATTTCTGCATGGCTGCTTCCTGCATCACTTAAGACTAAGAAGAAGAGATGGGCTCCCCCAATTTGCATTTCTCATCAGGGTCAGAAGCGCTTTAACATGCAGTGAATCTCTGATGTTGCTTTTggtttataataaaatgcatgaaaCAGCAGTGAAGATATTGAATACTAAAACATCATTACAGTCACATTAGCCAGTGCCACTAGAGAGTCTCTGCTGATGAGAAATAACACTGCAGGATGGAAATTATAATAATGGATTAAGAAGAGGTGCTGACAGTGTACCCTCTCCTCTGTCCCATCCTGAAGGTCGTTGCTGCCCTCAGACTCGTTTTGATATGCAACATCAGTTTTTATGTGCCGTTTAGAAAATGTGACAGACTGTGTACATGTGATTGATGTGTACAGCTTTAAAACCCAGCAGTTTGCATAAATGTTTctgtttattaaacagttttattttctcAGGTGCCTAGGAAGTCTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005720 lncRNA upstream 4661 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005719 lncRNA upstream 177884 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00004263 lncRNA upstream 958733 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005911 lncRNA upstream 958762 30978552 ~ 30988075 (+) True XLOC_002219
TCONS_00004260 lncRNA upstream 1405756 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00005913 lncRNA downstream 311199 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005914 lncRNA downstream 635873 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00005915 lncRNA downstream 1316837 33265381 ~ 33265687 (+) True XLOC_002243
TCONS_00005721 lncRNA downstream 1408552 33357096 ~ 33359026 (+) False XLOC_002244
TCONS_00005722 lncRNA downstream 1409300 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00004274 mRNA upstream 85363 31809226 ~ 31861474 (+) True XLOC_002227
TCONS_00004272 mRNA upstream 220351 31646020 ~ 31726486 (+) True XLOC_002224
TCONS_00004271 mRNA upstream 312410 31624143 ~ 31634427 (+) True XLOC_002223
TCONS_00004270 mRNA upstream 601147 31344227 ~ 31345690 (+) True XLOC_002222
TCONS_00004269 mRNA upstream 692973 31248036 ~ 31253864 (+) True XLOC_002221
TCONS_00004276 mRNA downstream 2794 31951338 ~ 32038263 (+) False XLOC_002228
TCONS_00004277 mRNA downstream 4958 31953502 ~ 32037058 (+) True XLOC_002228
TCONS_00004278 mRNA downstream 102362 32050906 ~ 32058078 (+) True XLOC_002230
TCONS_00004279 mRNA downstream 110148 32058692 ~ 32064405 (+) True XLOC_002231
TCONS_00004280 mRNA downstream 117811 32066355 ~ 32072782 (+) False XLOC_002232
TCONS_00004273 other upstream 254061 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 1186793 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 1210569 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004255 other upstream 2035141 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004250 other upstream 2094595 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004283 other downstream 447236 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004290 other downstream 1053775 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004303 other downstream 1753898 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 2087145 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 2098816 34047360 ~ 34058765 (+) False XLOC_002256

Expression Profile

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