RNA id: TCONS_00004276


Basic Information

Item Value
RNA id TCONS_00004276
length 2122
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_002228
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31869282 ~ 32041846 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCGGTATAGTCACGGGCAGAGGCGTGCATGTGCTCGGCCAGTGAGTGGACTCTGGACGGCAGAGTTGAAGACTTTAGAGAGCTGCTAGGAGAGAACGGACAATCCACGCTGCATTGTGTCGTCTTTTCTGCGCTTTTGAGATTTGGAAGCAAGTGGAGTCGGATACAGCGAACGACACAGACATGTGTAACCAAGCAGGAAGACGTCGGGAGGATCTGGGCCGGTGGGCTTAAGAGCTCTGTCTGTGCACTCAACCAGAAATCGGTGTCTTTTGCATCTAAACGAAAGCCTTAGAGTTTGAACCGAGCAGGATGGCATCCAGCCTTACATGTGCAGGTGTGATTTGGGCCCTGTTGTCGTTTCTTTGTGCTGCTACATCTTGTGTTGGCTTCTTCATGCCATATTGGCTGCTTGGGTCACAGATGGGTAAGCCAGTGTCATTTGGGACTTTTCGCCGCTGTTCATACCCCATAAGGGATGAGGCCCGTGGTGGGACTGTTATGTTGGAGCAATGTGGGCGCTACGCCTCCTTTCAGGGCATCCCAAGTCTGGAGTGGAGAATCTGCACGGTGGTGACAGGGATTGGATGTGGACTGCTGCTCCTGGTTGCTCTCACAGCAATAATGGGATGCTGTGTTACGGATCTAATCTCTCGCACCATAGGACGAGTGGCAGGAGGGATACAGTTTGTTGGAGGGCTGCTGATCGGGTCTGGATGTGCCCTGTACCCTTTAGGCTGGGACAGTGAAGAGGTCAGACAGACTTGCAGCAACAGTTCTGACCAGTTTGATCTTGGTTCTTGTGAGATCGGATGGGCTTATTACTGCACCGGGGCTGGAGCAGCGGCGGCCATGGTTTTGTGCACGTGGATGGCGTGTTTCGCAGGGAAGAAGCAGAAACACTATCCTTACTAAAGACAATAACTATGAACACTACATAATGTATATGGGCATGACTTCTACATCATGCTTCCTGAATGCATATATACAAAGACTCAAGACTGAACGTTGACCTTTCTGTGTCAGGTCCCAATTGAGATTTTCCCTTTGATTGACCTTTGACCTGCATCGGGATCTTTTGCATTTTAAGTGATGCCAGTATCAGTAATGGGAATATATCAGACGACCTATTGACTTTAATGTTCAAAAGGATCTACTGTATTACtctcatttatcttttttttagatTGTGTTTGTGTAAGTACGGTATTCTTGGTGGATTAAGTTGTTGTGTATCGGtacattgtattattataatatcctAGTCTATATAACGCGTTCATTTATGTCCTGTTATtgctttaaagtgatagttcaaccaaaaatttttttttactcactgtttactcatcctcaaacctttatgagttttgtttttctgctgaaacttattcattcattcattttcctttagcttagtccctttattcatcaggggtcgccacagcggaatgaaccaccaacttgtcttgtgcagcggatgcccttccagcagcaccctagtactgggaaacacgcatacactcttatattcatacactacggccaatttagttaatccaattacCTATagtacatgtgtttggactgtgagggaaacccatgccaacacgaggacatgcaaactccacacagaaatgccaactgacctagctgggactcgaaccactgatctccttgctgtgaggcgacaatgctaatcactgggccacctttttggagcttcatatgattataattaaagtcacatggaatattttgacaatattttaagcttgttttttagACTTTTCCTGTTTATAGAGGACgagagagctctctgatttcatctaaaatgtcttggtttgtgttctgaagatgaacgaagatCTCAGGGGTTTGACACGAAGGAGAGTAATTCATGAGAGAATATTCAGTTTTTGGTGATatctttgtgtgaactatccctttaaatgtctcAACTCCAAATAACACATCTCCAACAGACTGTATTTGCTAATAATTGTATGTTTGACAGTATATTGTGATCTTTGTTTGATATTTACAACTTTTATATAGCACATGCATACATGTCCATTATATTTCACcgcatttgtaaataaatactgtgATTTTAAAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041212-82 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including cleithrum; head mesenchyme; median fin fold; pectoral fin bud; and segmental plate. Orthologous to several human genes including LHFPL6 (LHFPL tetraspan subfamily member 6).

Ensembl:

ensembl_id ENSDART00000019416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005912 lncRNA upstream 2794 31946837 ~ 31948544 (+) True XLOC_002229
TCONS_00005720 lncRNA upstream 9162 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005719 lncRNA upstream 182385 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00004263 lncRNA upstream 963234 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005911 lncRNA upstream 963263 30978552 ~ 30988075 (+) True XLOC_002219
TCONS_00005913 lncRNA downstream 221480 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005914 lncRNA downstream 546154 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00005915 lncRNA downstream 1227118 33265381 ~ 33265687 (+) True XLOC_002243
TCONS_00005721 lncRNA downstream 1318833 33357096 ~ 33359026 (+) False XLOC_002244
TCONS_00005722 lncRNA downstream 1319581 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00004274 mRNA upstream 89864 31809226 ~ 31861474 (+) True XLOC_002227
TCONS_00004272 mRNA upstream 224852 31646020 ~ 31726486 (+) True XLOC_002224
TCONS_00004271 mRNA upstream 316911 31624143 ~ 31634427 (+) True XLOC_002223
TCONS_00004270 mRNA upstream 605648 31344227 ~ 31345690 (+) True XLOC_002222
TCONS_00004269 mRNA upstream 697474 31248036 ~ 31253864 (+) True XLOC_002221
TCONS_00004278 mRNA downstream 12643 32050906 ~ 32058078 (+) True XLOC_002230
TCONS_00004279 mRNA downstream 20429 32058692 ~ 32064405 (+) True XLOC_002231
TCONS_00004280 mRNA downstream 28092 32066355 ~ 32072782 (+) False XLOC_002232
TCONS_00004281 mRNA downstream 28274 32066537 ~ 32072789 (+) True XLOC_002232
TCONS_00004282 mRNA downstream 66042 32104305 ~ 32123204 (+) True XLOC_002233
TCONS_00004273 other upstream 258562 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 1191294 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 1215070 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004255 other upstream 2039642 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004250 other upstream 2099096 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004283 other downstream 357517 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004290 other downstream 964056 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004303 other downstream 1664179 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 1997426 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 2009097 34047360 ~ 34058765 (+) False XLOC_002256

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15423818_15456305.mRNA True 3872 mRNA 0.40 8 CI01000304 15421611 ~ 15456881 (+)