RNA id: TCONS_00004270


Basic Information

Item Value
RNA id TCONS_00004270
length 461
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_002222
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31344227 ~ 31345690 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGTTTGAGTGATTCACGGTGCAAGACCGAAATCCTCATCCTATTCCAGCTAGCAAACCCCAAGTTTTTGAGTGGTTACAGGTGAAAGACTGAAACCCTGCACTGAGTTATATGATGGTTGAACAGAATTCTGATCTCCCCACAACATCAGCTGCTAAAATGGAGGAAGACGAAGTTCCCAAAGCCTGCAAGATCTCCCAGAGCCAGAAAAAAGTGAAGCAGCTCAAAGAAAGGCCAAGAAATGGCACTAACAatgagaaggagaaagtgaaagaaaagagaaagaagagaaaaaagaCCAAGGTTGCTTCTTTCATCAGAGCTGCTCTACGATGGTTCTGCTTCTGTCCTCGTAATGAGCCGTTCACACTTTCCTCATCTGATGGTAAATGAGGGTTTTTGCATCTCAATATTTTCTAGTGTATAAtgtcattaataaactgtatttttactccCCTTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184470

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004263 lncRNA upstream 356123 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005911 lncRNA upstream 356152 30978552 ~ 30988075 (+) True XLOC_002219
TCONS_00004260 lncRNA upstream 803146 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00005910 lncRNA upstream 1432646 29906226 ~ 29911581 (+) False XLOC_002215
TCONS_00005908 lncRNA upstream 1437205 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005719 lncRNA downstream 397308 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00005720 lncRNA downstream 523592 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005912 lncRNA downstream 601147 31946837 ~ 31948544 (+) True XLOC_002229
TCONS_00005913 lncRNA downstream 914053 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005914 lncRNA downstream 1238727 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00004268 mRNA upstream 59437 31244674 ~ 31284790 (+) False XLOC_002221
TCONS_00004267 mRNA upstream 63678 31244619 ~ 31280549 (+) False XLOC_002221
TCONS_00004269 mRNA upstream 90363 31248036 ~ 31253864 (+) True XLOC_002221
TCONS_00004265 mRNA upstream 114213 31222656 ~ 31230014 (+) False XLOC_002220
TCONS_00004266 mRNA upstream 114213 31222757 ~ 31230014 (+) True XLOC_002220
TCONS_00004271 mRNA downstream 278453 31624143 ~ 31634427 (+) True XLOC_002223
TCONS_00004272 mRNA downstream 300330 31646020 ~ 31726486 (+) True XLOC_002224
TCONS_00004274 mRNA downstream 463536 31809226 ~ 31861474 (+) True XLOC_002227
TCONS_00004275 mRNA downstream 593106 31938796 ~ 32041846 (+) False XLOC_002228
TCONS_00004276 mRNA downstream 605648 31951338 ~ 32038263 (+) False XLOC_002228
TCONS_00004262 other upstream 584183 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 607959 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004255 other upstream 1432531 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004250 other upstream 1491985 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004249 other upstream 1493132 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004273 other downstream 346972 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004283 other downstream 1050090 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004290 other downstream 1656629 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004303 other downstream 2356752 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 2689999 34035689 ~ 34043319 (+) True XLOC_002255

Expression Profile

//