RNA id: TCONS_00004260


Basic Information

Item Value
RNA id TCONS_00004260
length 432
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_002216
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29963518 ~ 30589172 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGACGAGGGCCAGTACATCTGTGCGGTGCAGACCAGCAGCAGACCTCGAACCACATCCGTGCACATCATCGTTCAAGTTCCTCCAAAGATTGTGAACCTTTCGAGGGACCTTGTGGTGAATGAAGGCTCCAATGTCACTTTAATGTGCCTGGCTAATGGAAAACCAGAACCTGCCATTGTCTGGAGGATGAAATCACCTTCAGGTAAGATACAAACAGTGCCATGCCTCCTCTATTTGCAGGTAACATTTCACACATTCTGtgaaaaagcaaacaaatctGTAGTCAACAGTTTTTGCCTTTAAAATGAAACCGCAATCCTCAATGTTGGTCCAGTACTGCTGATGTATGTTCCCATTAGTGCAGTTTTTCTTTGACGATTTAGCAAAATATTGCATCCCACTGACATAATAAATGCTGGGAAGATAATA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-6020 Enables identical protein binding activity. Is expressed in head; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to several human genes including OPCML (opioid binding protein/cell adhesion molecule like).

Ensembl:

ensembl_id ENSDART00000136398

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005910 lncRNA upstream 586500 29906226 ~ 29911581 (+) False XLOC_002215
TCONS_00005908 lncRNA upstream 591059 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA upstream 591059 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00004241 lncRNA upstream 712177 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005718 lncRNA upstream 1406480 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00004263 lncRNA downstream 437305 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005911 lncRNA downstream 437471 30978552 ~ 30988075 (+) True XLOC_002219
TCONS_00005719 lncRNA downstream 1201917 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00005720 lncRNA downstream 1328201 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005912 lncRNA downstream 1405756 31946837 ~ 31948544 (+) True XLOC_002229
TCONS_00004253 mRNA upstream 610217 29855213 ~ 29887864 (+) False XLOC_002211
TCONS_00004252 mRNA upstream 610217 29855213 ~ 29887864 (+) False XLOC_002211
TCONS_00004254 mRNA upstream 627421 29855281 ~ 29870660 (+) True XLOC_002211
TCONS_00004246 mRNA upstream 640063 29849977 ~ 29858018 (+) False XLOC_002211
TCONS_00004264 mRNA downstream 681352 31222433 ~ 31229732 (+) False XLOC_002220
TCONS_00004265 mRNA downstream 681575 31222656 ~ 31230014 (+) False XLOC_002220
TCONS_00004266 mRNA downstream 681676 31222757 ~ 31230014 (+) True XLOC_002220
TCONS_00004267 mRNA downstream 703538 31244619 ~ 31280549 (+) False XLOC_002221
TCONS_00004268 mRNA downstream 703593 31244674 ~ 31284790 (+) False XLOC_002221
TCONS_00004255 other upstream 586385 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004250 other upstream 645839 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004249 other upstream 646986 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004248 other upstream 647414 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004237 other upstream 1024625 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004261 other downstream 195067 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004262 other downstream 218848 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004273 other downstream 1151581 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004283 other downstream 1854699 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004290 other downstream 2461238 33002319 ~ 33002433 (+) True XLOC_002241

Expression Profile

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