Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004241 |
| length | 734 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_002208 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29770120 ~ 29791466 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071456 | cellular response to hypoxia | biological_process |
| GO:1903298 | negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005788 | endoplasmic reticulum lumen | cellular_component |
| GO:0034663 | endoplasmic reticulum chaperone complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko04141 | Protein processing in endoplasmic reticulum |
| ko03110 | Chaperones and folding catalysts |
| id | description |
|---|---|
| ZDB-GENE-030131-5344 | Predicted to enable ATP binding activity. Predicted to be involved in cellular response to hypoxia and negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be part of endoplasmic reticulum chaperone complex. Is expressed in several structures, including anterior axial hypoblast; digestive system; hatching gland; immature eye; and polster. Human ortholog(s) of this gene implicated in immunodeficiency 59. Orthologous to human HYOU1 (hypoxia up-regulated 1). |
| ensembl_id | ENSDART00000149472 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005718 | lncRNA | upstream | 690036 | 29091237 ~ 29091601 (+) | True | XLOC_002201 |
| TCONS_00005907 | lncRNA | upstream | 1326552 | 28442909 ~ 28455085 (+) | True | XLOC_002199 |
| TCONS_00004221 | lncRNA | upstream | 1350865 | 28429557 ~ 28430772 (+) | True | XLOC_002198 |
| TCONS_00005905 | lncRNA | upstream | 1535217 | 28203764 ~ 28246420 (+) | False | XLOC_002195 |
| TCONS_00005906 | lncRNA | upstream | 1535217 | 28233240 ~ 28246420 (+) | True | XLOC_002195 |
| TCONS_00005908 | lncRNA | downstream | 107722 | 29893626 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005909 | lncRNA | downstream | 110149 | 29896053 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005910 | lncRNA | downstream | 120322 | 29906226 ~ 29911581 (+) | False | XLOC_002215 |
| TCONS_00004260 | lncRNA | downstream | 712177 | 30498081 ~ 30541081 (+) | True | XLOC_002216 |
| TCONS_00004263 | lncRNA | downstream | 1192482 | 30978386 ~ 30988104 (+) | False | XLOC_002219 |
| TCONS_00004236 | mRNA | upstream | 76128 | 29431529 ~ 29705509 (+) | False | XLOC_002206 |
| TCONS_00004238 | mRNA | upstream | 76376 | 29698467 ~ 29705261 (+) | True | XLOC_002206 |
| TCONS_00004232 | mRNA | upstream | 512914 | 29265463 ~ 29268723 (+) | False | XLOC_002204 |
| TCONS_00004233 | mRNA | upstream | 514179 | 29266392 ~ 29267458 (+) | False | XLOC_002204 |
| TCONS_00004230 | mRNA | upstream | 517614 | 29259882 ~ 29264023 (+) | False | XLOC_002203 |
| TCONS_00004242 | mRNA | downstream | 30777 | 29816681 ~ 29817589 (+) | True | XLOC_002209 |
| TCONS_00004243 | mRNA | downstream | 54821 | 29840725 ~ 29848513 (+) | True | XLOC_002210 |
| TCONS_00004244 | mRNA | downstream | 63593 | 29849497 ~ 29853828 (+) | False | XLOC_002211 |
| TCONS_00004245 | mRNA | downstream | 63639 | 29849543 ~ 29851318 (+) | False | XLOC_002211 |
| TCONS_00004246 | mRNA | downstream | 64073 | 29849977 ~ 29858018 (+) | False | XLOC_002211 |
| TCONS_00004237 | other | upstream | 308181 | 29473342 ~ 29473456 (+) | True | XLOC_002207 |
| TCONS_00004235 | other | upstream | 448462 | 29333059 ~ 29333175 (+) | True | XLOC_002205 |
| TCONS_00004234 | other | upstream | 513224 | 29266791 ~ 29268413 (+) | True | XLOC_002204 |
| TCONS_00004217 | other | upstream | 1528842 | 28252678 ~ 28252795 (+) | True | XLOC_002196 |
| TCONS_00004216 | other | upstream | 1619390 | 28160297 ~ 28162247 (+) | True | XLOC_002194 |
| TCONS_00004248 | other | downstream | 64668 | 29850572 ~ 29850667 (+) | True | XLOC_002212 |
| TCONS_00004249 | other | downstream | 65096 | 29851000 ~ 29851095 (+) | True | XLOC_002213 |
| TCONS_00004250 | other | downstream | 66243 | 29852147 ~ 29852242 (+) | True | XLOC_002214 |
| TCONS_00004255 | other | downstream | 124718 | 29910622 ~ 29911696 (+) | True | XLOC_002215 |
| TCONS_00004261 | other | downstream | 950244 | 30736148 ~ 30736268 (+) | True | XLOC_002217 |
