Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_002209 |
| gene name | h2ax1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29816681 ~ 29817589 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| h2ax1 | Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing; defense response to other organism; and membrane disruption in other organism. Predicted to be located in extracellular space. Predicted to be part of nucleosome. Orthologous to several human genes including H2AC21 (H2A clustered histone 21). |
| id | name | namespace |
|---|---|---|
| GO:0051673 | membrane disruption in other organism | biological_process |
| GO:0045087 | innate immune response | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0006342 | chromatin silencing | biological_process |
| GO:0050830 | defense response to Gram-positive bacterium | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041010-42 | Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing; defense response to other organism; and membrane disruption in other organism. Predicted to be located in extracellular space. Predicted to be part of nucleosome. Orthologous to several human genes including H2AC21 (H2A clustered histone 21). |
| ensembl_id | ENSDARG00000068995 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00004242 | True | 909 | mRNA | 0.49 | 1 | 29816681 | 29817589 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_002208 | hyou1 | coding | upstream | 25215 | 29770120 ~ 29791466 (+) |
| XLOC_002206 | dlg2 | coding | upstream | 111172 | 29431529 ~ 29705509 (+) |
| XLOC_002207 | BX470178.1 | coding | upstream | 343225 | 29473342 ~ 29473456 (+) |
| XLOC_002205 | FP102896.1 | coding | upstream | 483506 | 29333059 ~ 29333175 (+) |
| XLOC_002204 | crebzf | coding | upstream | 547958 | 29265463 ~ 29268723 (+) |
| XLOC_002210 | BX120005.2 | coding | downstream | 23136 | 29840725 ~ 29848513 (+) |
| XLOC_002211 | hspa8 | coding | downstream | 31908 | 29849497 ~ 29887864 (+) |
| XLOC_002212 | BX120005.5 | coding | downstream | 32983 | 29850572 ~ 29850667 (+) |
| XLOC_002213 | BX120005.4 | coding | downstream | 33411 | 29851000 ~ 29851095 (+) |
| XLOC_002214 | BX120005.1 | coding | downstream | 34558 | 29852147 ~ 29852242 (+) |
| XLOC_002201 | NA | non-coding | upstream | 725080 | 29091237 ~ 29091601 (+) |
| XLOC_002199 | NA | non-coding | upstream | 1361596 | 28442909 ~ 28455085 (+) |
| XLOC_002196 | CU207388.1 | non-coding | upstream | 1563886 | 28252678 ~ 28252795 (+) |
| XLOC_002215 | NA | non-coding | downstream | 76037 | 29893626 ~ 29911696 (+) |
| XLOC_002217 | BX957285.1 | non-coding | downstream | 918559 | 30736148 ~ 30736268 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| mexican tetra (Astyanax mexicanus) | G179583 | zgc:101846,LOC106525086,LOC108416226,LOC101161532 | unknown | NC_035916.1 | CM008319.1 | 27524328 ~ 27525388 (-) |
