RNA id: TCONS_00004232


Basic Information

Item Value
RNA id TCONS_00004232
length 2612
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_002204
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29265463 ~ 29268723 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTCGCCATTTTAGTTTATCTCAGTGTCGTTGCGAGCGCGTTTCTCCTACATTGGCTCGACAACGgctgaagttaaaacatttttatgtcTTGTTAAATCGGTTTATTCGCATTTTTTCAAGACCAGTCGACACTTAAAGACATCAGTGTACAATTTAAGTGTTCTCAATATCCTGAAACACGAACATGATCACCAGAAAAAGAGGAAGAAGCAGCATTAACACAAATACCACATGTTCAAGCACTTCCCATGAGACTGTTGACGCTTCAAAAACCAGTAGTGCAAGTGAAACAAACACGCACACCTCTCCAGAAAGCGACACCAACGATTGGGGCTTGGATGATCTGCTTGGCTCCGAGTTCAACTGGGACCTGGACAAGGATATGCTTGAAGCTTTCAGCAGCTTTGAATCGCAGACATCAGTCTACAATGAAACAATCCAAAGTGCAGAGCTTGATGTTTCCGCATCACGTATGGTCCAGAGGTCAAAACTACTAGACGTCTCCGGCCGGATCATCAACAAGAACGCCATAGCTGCAAGGATAAACCGATTAAAGAAGAAAGAATACGTCAGTGGCTTGGAGCAGAGAGTTGGCTCTTTGACTACAGAAAACCGCGTGCTCAAGCAGGAAAACGGAAATCTCAACAAGAGAGTGGAAGAGTTGGAGAATGAAACTAGGTACTTGAGAGCCGTGTTGGCTAATGAGAGCATGCTGGCTCAGCTGTTGTCTAGATTGAGCGGTGTGAACGGCATGAAATTTTCTACCTCGCTTTTCCAGGAACCCAATGAGAACGACCACGATTATGCCATGCCGATGAAGAGGGTGAAGGTGGAAGACAAAGAAACTGCAGGTGGCGTCTGCCTGCATGTGGACAAAGACCATGTCTCGGTGGAATTCTGCACCAAGTGTGCAGAGAGTTCAAGCTTGTCACATAAAATGTAGGGTCAAGTATTTTACCTTTTCACCGTTTCCAAGACTGAACTTTACACAAGATGTAAATGAGGGGACATGACGACAGTAGTCGTCAAAGATAGTTAACTGTTTAAATATGCAGAGCTTGAATAGCATGTCTGTTGAACTTGCTTTCAATACAAGTTACTGCTAAACTTGTTGACAGTTTTCTTCTAGGTGCTTGGTCCGCCCATGCTGAACGACCGGGTCACAGAACATCCATGACTGCTGAAATCCATGGTAAGGATCAAGATATTGAAGACTGCACAGAACTGGTTAACTCCTAAGATGAAGACAGTGCTTTTTGCCAGTTCACGGCACAATATCAACTGTAAATAAGcttaaatttagcttttttttttttcatttgttttgtttagatttatttacagaaagagaaaaaaaacattgttttgagtTGTATACATGGATGTTTATTGGAATACACAATCATATTATGTAATTGCAGATAAAATAGACAGGGAattaagtgaataaaaaaaaagtataaaatataagtTGGTGATGTTTCACAAAGGGCTTTCATCTATAATATTAACAACATACCCATTCAGCGGTCATGTGTAAAAGTTGATTTCAACAAGTTCTTTAATTTTGCCATAAACATTTGAGCCCTTTCTGAAATATCACTGTTTTTCTAAAGAATGTTTTTCATGTAGAACCCTTATTTTTCTTTATGCTAAAGTGGATTTtgctgtgggggaaaacagaagAGTCGGGACCTGCAGCTTGCATCATGGCCTGGTAAATTTAAGAAAGGTAGTACATGAAAGTGTAAGTTACTGCTTTTACTGACTCTTATCACACCCCTAAAGATGTCAGATGCTGATGTATTCATTTAGCATCTAAATGAGTAttgaaaaagtcttgttttaatGTATGGTAACAAGACATTGAACGACTATGTTAAATCCATGTGTTTCATTTTGATTTAACTTTTTGGGGTGTTTTCTATAAGTTGCCCTGATTCGAGTTAAAGAAATGGCATGTTCTTGAAGGGTTATGGTTTCTTAATAATGCTCATCTATATGTTATATGTATTAAAATTCCAAAGACTATGCAGGCACATGGCTGCATCTgttctgaaaaaaaatgtaataaattttcaTTTGATAAATGCAAATTGCTTTGTGTCCTCTTAAGATATTAACTACACTCTCCTTCTCTTTTTAGACAGCAATTTCTTCGCTCTCTACAAGAGCCTTTTCTTGCCTCTGCAAGGTGGATAAAGAGTGGTGGTGGTTTCTCCCAGATATATTCAAGTGTATACTGCACAATTCCTTAATGGTACTGGTAATTCAgtaacctcaaaaaaaaaaaaaaaaaaaaaaagtacacctATTCTGCTTGGGTTCTTAATGTCCCAGTTTATGGCTGTGACTCTAGCAATGCAGATCAACCCAAGCTGTTCTGAAATGTATAACTATGCAGTCTAAATTGTTTTGTTCCTGTCCAGTACTTCATACTGGTGTCAGTGTAAATGGGCGGAAAAGACTTTCCAAAAGTCTCTTATGAACTATTGGGTCAATGCTGTTAATgtctgtgaaatcaaaatttacaatgtttagttTGCAAGTGCACTTTGGTTAATAATTGGTTTAAGTTAAtcccttaaaataaaaatgtttgttttggt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-8015 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CREBZF (CREB/ATF bZIP transcription factor).

Ensembl:

ensembl_id ENSDART00000155390

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005718 lncRNA upstream 173862 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00005907 lncRNA upstream 810378 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00004221 lncRNA upstream 834691 28429557 ~ 28430772 (+) True XLOC_002198
TCONS_00005905 lncRNA upstream 1019043 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00004241 lncRNA downstream 512914 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005908 lncRNA downstream 624903 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA downstream 627330 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00005910 lncRNA downstream 637503 29906226 ~ 29911581 (+) False XLOC_002215
TCONS_00004260 lncRNA downstream 1229358 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00004230 mRNA upstream 1440 29259882 ~ 29264023 (+) False XLOC_002203
TCONS_00004231 mRNA upstream 1440 29260096 ~ 29264023 (+) True XLOC_002203
TCONS_00004225 mRNA upstream 40298 29138021 ~ 29225165 (+) False XLOC_002202
TCONS_00004229 mRNA upstream 41334 29204581 ~ 29224129 (+) True XLOC_002202
TCONS_00004224 mRNA upstream 41700 29137482 ~ 29223763 (+) False XLOC_002202
TCONS_00004236 mRNA downstream 162806 29431529 ~ 29705509 (+) False XLOC_002206
TCONS_00004238 mRNA downstream 429744 29698467 ~ 29705261 (+) True XLOC_002206
TCONS_00004239 mRNA downstream 501397 29770120 ~ 29791466 (+) False XLOC_002208
TCONS_00004240 mRNA downstream 501519 29770242 ~ 29790773 (+) False XLOC_002208
TCONS_00004242 mRNA downstream 547958 29816681 ~ 29817589 (+) True XLOC_002209
TCONS_00004217 other upstream 1012668 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004216 other upstream 1103216 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004211 other upstream 2202025 27063354 ~ 27063438 (+) True XLOC_002190
TCONS_00004210 other upstream 2202206 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004170 other upstream 2959120 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004235 other downstream 64336 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004237 other downstream 204619 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004248 other downstream 581849 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004249 other downstream 582277 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004250 other downstream 583424 29852147 ~ 29852242 (+) True XLOC_002214

Expression Profile

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