RNA id: TCONS_00004239


Basic Information

Item Value
RNA id TCONS_00004239
length 3959
RNA type mRNA
GC content 0.45
exon number 24
gene id XLOC_002208
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29770120 ~ 29791466 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGATCAGCGCTTCTCTCGGCGAGCAGCGAGTTGCGTGGATCCAATGAGAGCACGCCGCGTTCCGGGCCCAATGTGTGTTAGAACAAGCCGGTGATTGCAAGAGCAAAATCAAGCAAGCGAGGTGGTGTGGTCACAGAGCACAGCTGCTAAATGCCCCATTCTAGCTATCTGTAAGGCGTTAGATATTAAGTATCAACACACAAAAGTTGTGGTCCATATTTAGGGCAGGGTAAGCGCTTCTAAATAGTGATATTCAGGGTGTCAAGAGGGATTTAGCAGTCAACAGGAACCAATATAAAACTTGATCTGCTGAAGgTCACAATGAGGGAAAAgctgtcattatgggctattttTTGCCTAGTAGTAGCGTTCCTGCCTTCTCAGACAGAATCAGTCGCTGTGATGTCTGTGGACTTGGGCAGTGAATGGATGAAAGTCGCTATAGTGAAACCTGGTGTGCCAATGGAAATTGTATTAAACAAAGAGTCCCGGCGGAAAACTCCAGTCGCTGTGTGCTTAAAAGAAAATGAGAGGCTTTTTGGAGACGGCGCTTTAGGAGTGGCTGTGAAGAATCCTAAAGTGGTTTACAGATTCCTCCAGAGCATTTTGGGAAAGACGGCAGACAACCCACAGGTGGCAGAATATCAGAAACACTTCCCTGAGCACCAGCTGCAGAAAGATGAGAAAAGGGGCACCGTGTATTTCAAGTTCTCTGAAGAGATGCAGTATACTCCAGAGGAACTTTTGGGCATGATTTTGAACTACTCTCGCACTCTGGCTCAAGACTTTGCAGAACAGCCCATAAAAGATGCAGTGATTACAGTCCCAGCCTATTTTAATCAGGCAGAACGCAGGGCAGTTTTGCAGGCTGCTCATATTGCAGGTCTAAAGGTCCTTCAGCTAATCAATGATAACACTGCTGTGGCTTTGAACTATGGAGTCTTCAGGAGAAAGGACATCAACTCGACTGCACAGaaCATCATGTTTTATGATATGGGATCAGGAAGCACAACAGCCACCATTGTCACATATCAGACAGTGAAGACGAAGGAATCCGGTACACAGCCACAGCTTCAGATCCGTGGAGTTGGgtTTGACCGAACACTCGGTGGCTTTGAGATGGAGCTGAGGCTCAGAGATCATCTCGCTAAGCTCTTTAATGAACAGAAGAAATCAAAGAAGGATGTGAGGGACAATCTGCGTGCCATGGCCAAACTCCTTAAAGAGGCTCAGAGACTCAAAACTGTGCTGAGTGCCAATGCTGAACATACGGCACAGATTGAAGGTCTGATGGATGACATTGACTTCAAGGCAAAAGTGACTCGCTCTGAGTTTGAGGCTCTTTGTGAGGATCTGTTTGACAGAGTCCCTGGACCTGTGAAACAAGCATTAGCTGCGGCTGAGATGAGCATGGATGAAATTGAACAGGTTATTTTGGTTGGAGGAGCAACTAGAGTGCCCAAAGTGCAGGATGTGCTGCTCAAATCTGTGGGAAAAGAGGAACTGAGCAAGAACATTAATGCAGATGAAGCTGCGGCAATGGGTGCTGTTTATCAGGCCGCTGCACTCAGCAAAGCCTTCAAAGTCAAACCCTTCTTGGTCAGAGATGCAGCAGTGTTTCCCATACAGGTGGAGTTCAGTCGTGAGACTGAGGAAGAGGATGGCGTGAAGTCTCTGAAGCACAACAAGCGCATTTTGTTTCAGAGAATGGCTCCATATCCCCAGAGGAAGGTCATCACGTTCAACCGCTACATTGATGACTTTGTCTTTTACATCAACTATGGAGACCTCAGCTTCCTCAGTGAACAGGACATGAAaGTGTTTGGCTCTCAGAATCTGACAACAGTGAAGCTGTCTGGAGTCGGCAGCAGCTTTAAGAAGCATTCAGATGCTGAATCCAAAGGCATCAAGGCACATTTCAACATGGATGAGAGCGGGGTGTTAATTCTGGACCGGGTGGAGTCTGTGTTTGAAACCATTGTGGAGGAGAAGGAAGAGGAGTCCACGCTCacaaAGCTTGGAAACACCATTTCCAGTCTGTTTGGTGGAGGCAGCTCAGAGCCGAGTGCAAATGTGACCGAACCAGTTACGGATGAAGAAGAAGTGACTCCAGAGGCTGGAAAAGAGCAGGATCAGCCAGAGAAGCAGGAAGAAACTGTCCAGGAGAAGCCAGAGACGGAGGAGGGAAAAGAAGCAGAGCCTCAGGCCGAGGAGCAGAAAGAAGACAAAGAAAAAGCTGAAAATCAGGGAGAAACTGAATCAGAGAAAACAGAAAAACCTGAAGAAAAAACAACCGATGAGGAGAAGGAGGCTGACATGAAACCCAAACTGCAGAAAAAGAGCAAAATATCAGCAGACATTGCAGTGGAGCTGGAAGTGAACGATGTGCTGGATCCCAGCACTGAGGACATGGAGGGTTCCAAGAAGAAGTTGCAGGACCTCACTGACCGTGATTTGGAGAAGCAGGAGAGAGAAAAGACCCTGAACAGCCTGGAGGCTTTTATCTTTGAGACGCAGGATAAGCTGTATCAGGATGAGTATCAGGCTGTGGTGACAGAGGAGGAGAAGGAGCAGATTTCAGGCAGGCTGAGCGAGGCGTCCAGCTGGATGGATGAGGAGGGATACAGCGCAGGCACCAAACTGCTGAAGGAGAAGCTGTCTGAACTGAAGAAGCTTTGTAAAGGCATGTTCTTCAGGGTGGAGGAGAGGAAGAAGTGGCCCGACAGACTGGCAGCTCTGGACAGCATGCTCAACCACTCCAACATCTTCCTCAAGAGTGCCAGACTGATTCCTGAGAGTGACCAGATCTTCACAGAGGTTGAACTGAAGACATTAGAGAAAGTCATCAATGAGACGATCACATGGAAAAACGAGACTGTTGCTGAACAGGAGAAATTATCCCCGACAGTAAAACCAGTTCTGCTGTCGAAGGACATCGAAGCAAAGCTTTCTCTCTTAGACAGAGAGGTCAATTACCTGCTGAACAAAGCCAAGTTTGCCAAACCAAAACCTAAAGACAAAGCGAAAGACAAGAACAGCACCAGCGAGAGCAGCAAAGCTAACAGCACAGACGATGCAGAGAAGGTCATTCCTCCTAAAACTGAGGACGGCGCGGAAAAGGTGAAGCCGGCAGAGGAACCTCCGGTCGTTGAAGAAAAAGCGGAAGAAACCATACTTGAACTAAATCCAGCTGAAAATACGGATGATAAAACAGAATCGACAGAGAGCAGTAAATCAGAAAACCACATAGAGGATGAATTATAACATCTGGAATTCTTAAAggctttttgttatatttattgactcCGTTAAATGGTTCaaaaatcctttaattcttttcttTTCCCCCCTTACTGTCTCAACACATTGGAAGCGCTTGAAAATGAAGGTGTATATTTCTGTAGTTTCCtgagccaaaagaaaaaaaacctcaagtCCATCTTTACTCTTTCCATTCACATTCATTTTGGCTTCTTAATCCATGAATTTATGATCTTCTCCCTCTCAAAAAGTAAAACACACAGTCCCTGTTTGTTGGAGGAAATCAGAATGGCATGCTTGACCAAAGCAAACACGctgtccttttttattattattattaatgtgaatGGGAGACTTTCTGCTTGTTTTtgtgtccagaaatgtatattgaggAAATGTGACATTCTGCTGCTGAATTGTTTCATTAGCTTAACTCTCACGCCTTGTCAATATATATTGGCTAGTTTTTTCAGTTCCCCGATAAAAATCCATCCGTACCTGTGAGCATCCTCAATGCCAAACGTCTCCTGTGTGTATGGACTTCAGTATAGTGTTGCACTGATATCAAAGGAGAATCGTTATTTTGTTTTCCTCTTGTTGCGTTCACATCTTCAGCATTTTTGTCATTTACACAAGTCTGTGCAAAAAAGGGAGAAGATTGTttctaaaaaatgttaataaagtcTGTTTTATAAAA

Function

GO:

id name namespace
GO:0071456 cellular response to hypoxia biological_process
GO:1903298 negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0034663 endoplasmic reticulum chaperone complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-5344 Predicted to enable ATP binding activity. Predicted to be involved in cellular response to hypoxia and negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be part of endoplasmic reticulum chaperone complex. Is expressed in several structures, including anterior axial hypoblast; digestive system; hatching gland; immature eye; and polster. Human ortholog(s) of this gene implicated in immunodeficiency 59. Orthologous to human HYOU1 (hypoxia up-regulated 1).

Ensembl:

ensembl_id ENSDART00000100032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005718 lncRNA upstream 678519 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00005907 lncRNA upstream 1315035 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00004221 lncRNA upstream 1339348 28429557 ~ 28430772 (+) True XLOC_002198
TCONS_00005905 lncRNA upstream 1523700 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00005908 lncRNA downstream 102160 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00005909 lncRNA downstream 104587 29896053 ~ 29907022 (+) False XLOC_002215
TCONS_00005910 lncRNA downstream 114760 29906226 ~ 29911581 (+) False XLOC_002215
TCONS_00004260 lncRNA downstream 706615 30498081 ~ 30541081 (+) True XLOC_002216
TCONS_00004263 lncRNA downstream 1186920 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00004236 mRNA upstream 64611 29431529 ~ 29705509 (+) False XLOC_002206
TCONS_00004238 mRNA upstream 64859 29698467 ~ 29705261 (+) True XLOC_002206
TCONS_00004232 mRNA upstream 501397 29265463 ~ 29268723 (+) False XLOC_002204
TCONS_00004233 mRNA upstream 502662 29266392 ~ 29267458 (+) False XLOC_002204
TCONS_00004230 mRNA upstream 506097 29259882 ~ 29264023 (+) False XLOC_002203
TCONS_00004242 mRNA downstream 25215 29816681 ~ 29817589 (+) True XLOC_002209
TCONS_00004243 mRNA downstream 49259 29840725 ~ 29848513 (+) True XLOC_002210
TCONS_00004244 mRNA downstream 58031 29849497 ~ 29853828 (+) False XLOC_002211
TCONS_00004245 mRNA downstream 58077 29849543 ~ 29851318 (+) False XLOC_002211
TCONS_00004246 mRNA downstream 58511 29849977 ~ 29858018 (+) False XLOC_002211
TCONS_00004237 other upstream 296664 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004235 other upstream 436945 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004234 other upstream 501707 29266791 ~ 29268413 (+) True XLOC_002204
TCONS_00004217 other upstream 1517325 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004216 other upstream 1607873 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004248 other downstream 59106 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004249 other downstream 59534 29851000 ~ 29851095 (+) True XLOC_002213
TCONS_00004250 other downstream 60681 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004255 other downstream 119156 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004261 other downstream 944682 30736148 ~ 30736268 (+) True XLOC_002217

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU490736 True 4019 lncRNA 0.44 24 CI01000304 14305217 ~ 14318043 (-)
rainbow trout (Oncorhynchus mykiss) TU490736 True 289 lncRNA 0.45 2 NC_048569.1 70332364 ~ 70338129 (+)