XLOC_002216 (ntm)


Basic Information

Item Value
gene id XLOC_002216
gene name ntm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29963518 ~ 30589172 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004256
GGACTTCTCAGCGCCTGCGtaggtgagtgagtgagtgagtgcccACTTCACAGTTACTTAGAGCCTGGGACTACACTTCCACTTATTCCTCCGGATTTTCAAATTGGCGTTTGCAAGAAGGAAAGAAATCACGCAGACCTCACGCGCTCTCGATCCGCACCAGACGCCATGAAGAATCCCGTGTTGTGGGTCGTCCTGATTGGAATATCCATCGCTTTGATTCAACAAGGTTTGCCCGTCCGCAGCCAAGGAGAATCTCAGTCCGATAACAAACAGATGGACAATATCACCATCAGACAAGGAGAGACGCTCTTCCTCAGTTGCTCGCAAGGGGACTTTGTGACACACACAGCATGGCTGAACAGATCGAGTATACTCTACGCCGGAGAGGATAAGTGGTCTGTGGACCCGCGGGTGAGTCTGGTTACTCTGAGCCAGGAGGAGTTCACCATTAAGATCGAGGATGTGGACGTGACAGACGAGGGCCAGTACATCTGTGCGGTGCAGACCAGCAGCAGACCTCGAACCACATCCGTGCACATCATCGTTCAAGTTCCTCCAAAGATTGTGAACCTTTCGAGGGACCTTGTGGTGAATGAAGGCTCCAATGTCACTTTAATGTGCCTGGCTAATGGAAAACCAGAACCTGCCATTGTCTGGAGGATGAAATCACCTTCAGATGACAGCCTGAGCTCAGACAGCGAGGTTCTGGATATTCCCTTCATCAGCCGCTATCGGGCAGGAGTGTATGAATGCACCGCAGCCAATGACATAGCTGTGGACACACAGACGGTCGAGCTCACAGTCAACTATGCTCCCAGTGTTTCAGATGGCAGGGATGTTGGCGTGACTCTGGGTCAGAGAGGTGTCCTGCAGTGTGAGGCAGATGCTGTACCCGAGGCAGATTTTGAGTGGTACAGAGATGACAGAAGGATCTTCAATGGCTTAGATGGCATTGAGATCGAGGCTGCCGGAGCACTTTCAAGGCTGACTTTCTTTAACGTGTCCGAGGCAGACTACGGAAATTACACCTGCGTCGCCATCAATAAACTCGGGAGCGCCAACACCAGCTTCGTGCTATACG
>TCONS_00004257
TCAAATTGGCGTTTGCAAGAAGGAAAGAAATCACGCAGACCTCACGCGCTCTCGATCCGCACCAGACGCCATGAAGAATCCCGTGTTGTGGGTCGTCCTGATTGGAATATCCATCGCTTTGATTCAACAAGGTTTGCCCGTCCGCAGCCAAGGAGAATCTCAGTCCGATAACAAACAGATGGACAATATCACCATCAGACAAGGAGAGACGCTCTTCCTCAGTTGCTCGCAAGGGGACTTTGTGACACACACAGCATGGCTGAACAGATCGAGTATACTCTACGCCGGAGAGGATAAGTGGTCTGTGGACCCGCGGGTGAGTCTGGTTACTCTGAGCCAGGAGGAGTTCACCATTAAGATCGAGGATGTGGACGTGACAGACGAGGGCCAGTACATCTGTGCGGTGCAGACCAGCAGCAGACCTCGAACCACATCCGTGCACATCATCGTTCAAGTTCCTCCAAAGATTGTGAACCTTTCGAGGGACCTTGTGGTGAATGAAGGCTCCAATGTCACTTTAATGTGCCTGGCTAATGGAAAACCAGAACCTGCCATTGTCTGGAGGATGAAATCACCTTCAGATGACAGCCTGAGCTCAGACAGCGAGGTTCTGGATATTCCCTTCATCAGCCGCTATCGGGCAGGAGTGTATGAATGCACCGCAGCCAATGACATAGCTGTGGACACACAGACGGTCGAGCTCACAGTCAACTATGCTCCCAGTGTTTCAGATGGCAGGGATGTTGGCGTGACTCTGGGTCAGAGAGGTGTCCTGCAGTGTGAGGCAGATGCTGTACCCGAGGCAGATTTTGAGTGGTACAGAGATGACAGAAGGATCTTCAATGGCTTAGATGGCATTGAGATCGAGGCTGCCGGAGCACTTTCAAGGCTGACTTTCTTTAACGTGTCCGAGGCAGACTACGGAAATTACACCTGCGTCGCCATCAATAAACTCGGGAGCGCCAACACCAGCTTCGTGCTATACGAAATAATTGAGCCCACTAGTTCAACACTATTGCAAG
>TCONS_00004259
ATGAAGAATCCCGTGTTGTGGGTCGTCCTGATTGGAATATCCATCGCTTTGATTCAACAAGGTTTGCCCGTCCGCAGCCAAGGAGAATCTCAGTCCGATAACAAACAGATGGACAATATCACCATCAGACAAGGAGAGACGCTCTTCCTCAGTTGCTCGCAAGGGGACTTTGTGACACACACAGCATGGCTGAACAGATCGAGTATACTCTACGCCGGAGAGGATAAGTGGTCTGTGGACCCGCGGGTGAGTCTGGTTACTCTGAGCCAGGAGGAGTTCACCATTAAGATCGAGGATGTGGACGTGACAGACGAGGGCCAGTACATCTGTGCGGTGCAGACCAGCAGCAGACCTCGAACCACATCCGTGCACATCATCGTTCAAGTTCCTCCAAAGATTGTGAACCTTTCGAGGGACCTTGTGGTGAATGAAGGCTCCAATGTCACTTTAATGTGCCTGGCTAATGGAAAACCAGAACCTGCCATTGTCTGGAGGATGAAATCACCTTCAGATGACAGCCTGAGCTCAGACAGCGAGGTTCTGGATATTCCCTTCATCAGCCGCTATCGGGCAGGAGTGTATGAATGCACCGCAGCCAATGACATAGCTGTGGACACACAGACGGTCGAGCTCACAGTCAACTATGCTCCCAGTGTTTCAGATGGCAGGGATGTTGGCGTGACTCTGGGTCAGAGAGGTGTCCTGCAGTGTGAGGCAGATGCTGTACCCGAGGCAGATTTTGAGTGGTACAGAGATGACAGAAGGATCTTCAATGGCTTAGATGGCATTGAGATCGAGGCTGCCGGAGCACTTTCAAGGCTGACTTTCTTTAACGTGTCCGAGGCAGACTACGGAAATTACACCTGCGTCGCCATCAATAAACTCGGGAGCGCCAACACCAGCTTCGTGCTATACGTTCAGGACGGCAACAGCGGCACGTCGACGGTTTTCAACCCCTTCTGTCTACTCATCGCAATCCTACAACTCCTGCTCAAGTTTTGA
>TCONS_00004258
ATGAAGAATCCCGTGTTGTGGGTCGTCCTGATTGGAATATCCATCGCTTTGATTCAACAAGGTTTGCCCGTCCGCAGCCAAGGAGAATCTCAGTCCGATAACAAACAGATGGACAATATCACCATCAGACAAGGAGAGACGCTCTTCCTCAGTTGCTCGCAAGGGGACTTTGTGACACACACAGCATGGCTGAACAGATCGAGTATACTCTACGCCGGAGAGGATAAGTGGTCTGTGGACCCGCGGGTGAGTCTGGTTACTCTGAGCCAGGAGGAGTTCACCATTAAGATCGAGGATGTGGACGTGACAGACGAGGGCCAGTACATCTGTGCGGTGCAGACCAGCAGCAGACCTCGAACCACATCCGTGCACATCATCGTTCAAGTTCCTCCAAAGATTGTGAACCTTTCGAGGGACCTTGTGGTGAATGAAGGCTCCAATGTCACTTTAATGTGCCTGGCTAATGGAAAACCAGAACCTGCCATTGTCTGGAGGATGAAATCACCTTCAGATGACAGCCTGAGCTCAGACAGCGAGGTTCTGGATATTCCCTTCATCAGCCGCTATCGGGCAGGAGTGTATGAATGCACCGCAGCCAATGACATAGCTGTGGACACACAGACGGTCGAGCTCACAGTCAACTATGCTCCCAGTGTTTCAGATGGCAGGGATGTTGGCGTGACTCTGGGTCAGAGAGGTGTCCTGCAGTGTGAGGCAGATGCTGTACCCGAGGCAGATTTTGAGTGGTACAGAGATGACAGAAGGATCTTCAATGGCTTAGATGGCATTGAGATCGAGGCTGCCGGAGCACTTTCAAGGCTGACTTTCTTTAACGTGTCCGAGGCAGACTACGGAAATTACACCTGCGTCGCCATCAATAAACTCGGGAGCGCCAACACCAGCTTCGTGCTATACGAAATAATTGAGCCCACTAGTTCAACACTATTGCAAGTGGAAACATCACCTTCAGTTTTAGAAATGACTTCATCTGATTTAGAGCAAACACCCCTTCAAAATGATTTGTGGGAAGGACCCGGAGCAGTTCAGGACGGCAACAGCGGCACGTCGACGGTTTTCAACCCCTTCTGTCTACTCATCGCAATCCTACAACTCCTGCTCAAGTTTTGA
>TCONS_00004260
ACAGACGAGGGCCAGTACATCTGTGCGGTGCAGACCAGCAGCAGACCTCGAACCACATCCGTGCACATCATCGTTCAAGTTCCTCCAAAGATTGTGAACCTTTCGAGGGACCTTGTGGTGAATGAAGGCTCCAATGTCACTTTAATGTGCCTGGCTAATGGAAAACCAGAACCTGCCATTGTCTGGAGGATGAAATCACCTTCAGGTAAGATACAAACAGTGCCATGCCTCCTCTATTTGCAGGTAACATTTCACACATTCTGtgaaaaagcaaacaaatctGTAGTCAACAGTTTTTGCCTTTAAAATGAAACCGCAATCCTCAATGTTGGTCCAGTACTGCTGATGTATGTTCCCATTAGTGCAGTTTTTCTTTGACGATTTAGCAAAATATTGCATCCCACTGACATAATAAATGCTGGGAAGATAATA

Function

symbol description
ntm Enables identical protein binding activity. Is expressed in head; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to several human genes including OPCML (opioid binding protein/cell adhesion molecule like).

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-6020 Enables identical protein binding activity. Is expressed in head; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to several human genes including OPCML (opioid binding protein/cell adhesion molecule like).

Ensembl:

ensembl_id ENSDARG00000018065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004256 False 1084 mRNA 0.52 7 29963518 30576089
TCONS_00004257 False 1022 mRNA 0.51 8 29963616 30579384
TCONS_00004259 False 1002 mRNA 0.52 8 29963686 30589172
TCONS_00004258 False 1128 mRNA 0.50 10 29963686 30589172
TCONS_00004260 True 432 lncRNA 0.43 2 30498081 30541081

Neighbor

gene id symbol gene type direction distance location
XLOC_002215 NA coding upstream 51822 29893626 ~ 29911696 (+)
XLOC_002211 hspa8 coding upstream 75654 29849497 ~ 29887864 (+)
XLOC_002214 BX120005.1 coding upstream 111276 29852147 ~ 29852242 (+)
XLOC_002213 BX120005.4 coding upstream 112423 29851000 ~ 29851095 (+)
XLOC_002212 BX120005.5 coding upstream 112851 29850572 ~ 29850667 (+)
XLOC_002217 BX957285.1 coding downstream 146976 30736148 ~ 30736268 (+)
XLOC_002218 CR925809.1 coding downstream 170757 30759929 ~ 30760044 (+)
XLOC_002219 CR925737.1 coding downstream 389214 30978386 ~ 30988104 (+)
XLOC_002220 tmem218 coding downstream 633261 31222433 ~ 31230014 (+)
XLOC_002221 robo4 coding downstream 655447 31244619 ~ 31284790 (+)
XLOC_002207 BX470178.1 non-coding upstream 490062 29473342 ~ 29473456 (+)
XLOC_002225 BX571852.1 non-coding downstream 1103490 31692662 ~ 31692776 (+)
XLOC_002226 NA non-coding downstream 1153826 31742998 ~ 31768953 (+)

Expression


Co-expression Network