Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004259 |
| length | 1002 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 8 |
| gene id | XLOC_002216 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29963518 ~ 30589172 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005515 | protein binding | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060421-6020 | Enables identical protein binding activity. Is expressed in head; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to several human genes including OPCML (opioid binding protein/cell adhesion molecule like). |
| ensembl_id | ENSDART00000182990 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005910 | lncRNA | upstream | 52105 | 29906226 ~ 29911581 (+) | False | XLOC_002215 |
| TCONS_00005908 | lncRNA | upstream | 56664 | 29893626 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005909 | lncRNA | upstream | 56664 | 29896053 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00004241 | lncRNA | upstream | 177782 | 29781637 ~ 29785904 (+) | True | XLOC_002208 |
| TCONS_00005718 | lncRNA | upstream | 872085 | 29091237 ~ 29091601 (+) | True | XLOC_002201 |
| TCONS_00004263 | lncRNA | downstream | 389214 | 30978386 ~ 30988104 (+) | False | XLOC_002219 |
| TCONS_00005911 | lncRNA | downstream | 389380 | 30978552 ~ 30988075 (+) | True | XLOC_002219 |
| TCONS_00005719 | lncRNA | downstream | 1153826 | 31742998 ~ 31768953 (+) | True | XLOC_002226 |
| TCONS_00005720 | lncRNA | downstream | 1280110 | 31869282 ~ 31942176 (+) | False | XLOC_002228 |
| TCONS_00005912 | lncRNA | downstream | 1357665 | 31946837 ~ 31948544 (+) | True | XLOC_002229 |
| TCONS_00004253 | mRNA | upstream | 75822 | 29855213 ~ 29887864 (+) | False | XLOC_002211 |
| TCONS_00004252 | mRNA | upstream | 75822 | 29855213 ~ 29887864 (+) | False | XLOC_002211 |
| TCONS_00004254 | mRNA | upstream | 93026 | 29855281 ~ 29870660 (+) | True | XLOC_002211 |
| TCONS_00004246 | mRNA | upstream | 105668 | 29849977 ~ 29858018 (+) | False | XLOC_002211 |
| TCONS_00004264 | mRNA | downstream | 633261 | 31222433 ~ 31229732 (+) | False | XLOC_002220 |
| TCONS_00004265 | mRNA | downstream | 633484 | 31222656 ~ 31230014 (+) | False | XLOC_002220 |
| TCONS_00004266 | mRNA | downstream | 633585 | 31222757 ~ 31230014 (+) | True | XLOC_002220 |
| TCONS_00004267 | mRNA | downstream | 655447 | 31244619 ~ 31280549 (+) | False | XLOC_002221 |
| TCONS_00004268 | mRNA | downstream | 655502 | 31244674 ~ 31284790 (+) | False | XLOC_002221 |
| TCONS_00004255 | other | upstream | 51990 | 29910622 ~ 29911696 (+) | True | XLOC_002215 |
| TCONS_00004250 | other | upstream | 111444 | 29852147 ~ 29852242 (+) | True | XLOC_002214 |
| TCONS_00004249 | other | upstream | 112591 | 29851000 ~ 29851095 (+) | True | XLOC_002213 |
| TCONS_00004248 | other | upstream | 113019 | 29850572 ~ 29850667 (+) | True | XLOC_002212 |
| TCONS_00004237 | other | upstream | 490230 | 29473342 ~ 29473456 (+) | True | XLOC_002207 |
| TCONS_00004261 | other | downstream | 146976 | 30736148 ~ 30736268 (+) | True | XLOC_002217 |
| TCONS_00004262 | other | downstream | 170757 | 30759929 ~ 30760044 (+) | True | XLOC_002218 |
| TCONS_00004273 | other | downstream | 1103490 | 31692662 ~ 31692776 (+) | True | XLOC_002225 |
| TCONS_00004283 | other | downstream | 1806608 | 32395780 ~ 32395896 (+) | True | XLOC_002235 |
| TCONS_00004290 | other | downstream | 2413147 | 33002319 ~ 33002433 (+) | True | XLOC_002241 |
