Fish Transcriptome and Expression Database

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model fish

XLOC_002235 (CR388187.1)

Basic Information

Item	Value
gene id	XLOC_002235
gene name	CR388187.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	32395780 ~ 32395896 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004283
aaaagtggccatgtcaccctgcagcccaagaccggttactcactgaagctaagcagggctgagtctggtcagtacctggatgggagaccactagggaacactaagTTGCTGTtgtaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116183

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00004283	True	117	rRNA	0.52	1	32395780	32395896

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002234	NA	coding	upstream	131482	32259743 ~ 32264298 (+)
XLOC_002233	wnt11	coding	upstream	272576	32104305 ~ 32123204 (+)
XLOC_002232	si:dkey-250d21.1	coding	upstream	322991	32066355 ~ 32072789 (+)
XLOC_002231	thap12a	coding	upstream	331375	32058692 ~ 32064405 (+)
XLOC_002230	si:ch211-266i6.3	coding	upstream	337702	32050906 ~ 32058078 (+)
XLOC_002236	map6a	coding	downstream	164771	32560667 ~ 32601380 (+)
XLOC_002237	NA	coding	downstream	188521	32584417 ~ 32592071 (+)
XLOC_002238	zbtb21	coding	downstream	250506	32646402 ~ 32648803 (+)
XLOC_002239	rad51c	coding	downstream	266990	32662886 ~ 32672508 (+)
XLOC_002240	ppm1e	coding	downstream	287193	32683089 ~ 32788832 (+)
XLOC_002228	NA	non-coding	upstream	353934	31869282 ~ 32041846 (+)
XLOC_002229	NA	non-coding	upstream	447236	31946837 ~ 31948544 (+)
XLOC_002226	NA	non-coding	upstream	626827	31742998 ~ 31768953 (+)
XLOC_002225	BX571852.1	non-coding	upstream	703004	31692662 ~ 31692776 (+)
XLOC_002241	CU929186.1	non-coding	downstream	606423	33002319 ~ 33002433 (+)
XLOC_002243	NA	non-coding	downstream	869485	33265381 ~ 33265687 (+)
XLOC_002244	NA	non-coding	downstream	961200	33357096 ~ 33359026 (+)
XLOC_002245	NA	non-coding	downstream	964432	33360328 ~ 33368165 (+)

Expression

Co-expression Network