XLOC_002240 (ppm1e)


Basic Information

Item Value
gene id XLOC_002240
gene name ppm1e
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32683089 ~ 32788832 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004289
AGACTTCTTGCCCGGCTCCAGCTGTCTGTCTCCGGTCTCTCCAGGAATGAGAAGCGATGGCCGGCTCTGCCAACGAGGAGAAAACCTTCAAGAGGTTCCTGGAGCTCTTCTTACGGGAGATGAGGCCACCTATCCAGGAGGACGTACCTCTGCCTACTCGCCCCTTGTCGGACCTCATCTCGGAGGACGAGGTGGAGGGGGAATGCCTGGACCTGTGTCTCCAGCACCTGTGTAAATATAATTGCCCTTTCTCCTTGGCTGCAGCTCTGGCCCGCGGTACAGCAGACAGCATCCTGCAAAGTGATCTCTCCTTGTACCATCTCAACAAGAGTGTTGAGGACGGGACTGAGACTGAGACTGAGACAGAAACGGAGACACAGACCCAGATCGATTCGGTGAAGCTGGCGCGACTTGTCTTCAATAAGCTGTGTGAGACGTGCAGTCAGTGGCTAAAAGACTTTCCGTATCGCCGCCGTCACTTGCCCTACTACGAGACTTCTATCCATGCTATTAAAAACATGCGCCGGAAGATGGAGGACAAACACGTTGTGATTCCTGACTTCAACACACTCTTCAATCTACAGGATCAAGAAGAGCAGGCCTACTTTGCCGTGTTTGATGGTCACGGCGGGGTGGACGCTGCCAACTACGCCGCCAATCACCTGCATGTTAATCTGGTCAGGCAAGAAATGTTCAGCCAGGACGCAGGAGAAGCCTTGTGTCACTCCTTCAAACTGACCGATGAGAGATTCATCAAAAAAGCAAAAAGCGAGAACCTGCGCTGTGGCACCACAGGGGTTGTGACTTTTCTGAGGGGTCGCACGCTGTACGTGACCTGGCTGGGAGATTCACAGGTCATGATGGTGAAGAGAGGTCAACCGGTGGAGCTAATGAAGCCACACAAACCTGACAGAGAGgaTGAGAAAAAGAGGATTGAGGCATTGGGAGGGTGTGTGATCTGGTTCGGCACATGGAGGGTGAATGGCAGCCTGTCTGTGTCAAGAGCCATCGGTGATTCAGAACACAAGCCCTACATCTGTGGCGATGCTGACTGCAGCACCTTCAACCTGGACGGCAGCGAGGACTACTTGATCCTGGCCTGCGACGGCTTCTACGACACAGTGAACCCAGAAGAAGCCGTCCGAGTGGTGAGCGACCACTTGCAGGAGAACAACGGGGACACCGCCATGGTGGCCCACAAGCTGGTGGCCTCAGCCCGAGATGCGGGGTCCAGTGACAACATCACGGTAATCGTAGTGTTCCTCAGAGACCCCCGTTTGCCTCCGCCCTCAGATGAGCCTGAGGAGCAGCACGATGAGGAGCCATTGGAGGACGCAggagaagaggaagaagaggaagaagcaGTGGATGCCTTGCAGAGTGAATTGGTGTGTCAAGATGGAGGTGCGGAGAATGGAGGAAAGAACCGGGGCGGCTGGCCTCTGCAGCAGTGCTCAGCGCCAGCTGACCTGGCCTACGAAGACCGCATGGATTCATTCACGGACAGAACAAGTCTGAGCATCACAGGGCCGGATGTGCATGCAGAGACTGGTTGCTTCAGGATCCCAGCTTCATCTGGCCTGCCCCCAACCAGAACCGTCACGCCAGACCTCATTCCCTCCAACAGCAGGGCCGGCGCTGCCTGGCGTCCTAACCAAGAGGACGACCCTTCTGGGTACAGGCAAAAACCCCAGCCTAAACCTAGAGTGCCCTCCTACATGCAGACCACCTCAGATGGACAATTGCTGGAGGTGGCTGCGCTCTTCTCTCAGGAGGGCCGCAAGAAGAGGCGGCTGGACGTCCTGCCGCTGAGGAGGGAATCACAGCGTCTGACCCGGAGGGCCAGGGAAAGCCACGGTCCTCTGAGCTGCTTCCCTAGTGTGCCCTATCCTCTGCGCTCCTCAGAGAGGAAGCCCGGGATAGCCTTTCCTCATGTAACCCATAGCAAAAGGGTCTAATCGACATCTTCCTTGCCCCATCATCACGCCCTACATTCTTGAAGCTAACACACCCTCCTGTGGTGGACGT

Function

symbol description
ppm1e Predicted to enable kinase activity; metal ion binding activity; and protein serine/threonine phosphatase activity. Acts upstream of or within dephosphorylation. Located in nucleus. Is expressed in central nervous system. Orthologous to human PPM1E (protein phosphatase, Mg2+/Mn2+ dependent 1E).

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0043169 cation binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-070326-2 Predicted to enable kinase activity; metal ion binding activity; and protein serine/threonine phosphatase activity. Acts upstream of or within dephosphorylation. Located in nucleus. Is expressed in central nervous system. Orthologous to human PPM1E (protein phosphatase, Mg2+/Mn2+ dependent 1E).

Ensembl:

ensembl_id ENSDARG00000026499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004289 True 2028 mRNA 0.56 7 32683089 32788832

Neighbor

gene id symbol gene type direction distance location
XLOC_002239 rad51c coding upstream 10581 32662886 ~ 32672508 (+)
XLOC_002238 zbtb21 coding upstream 34286 32646402 ~ 32648803 (+)
XLOC_002236 map6a coding upstream 81709 32560667 ~ 32601380 (+)
XLOC_002237 NA coding upstream 91018 32584417 ~ 32592071 (+)
XLOC_002235 CR388187.1 coding upstream 287193 32395780 ~ 32395896 (+)
XLOC_002241 CU929186.1 coding downstream 213487 33002319 ~ 33002433 (+)
XLOC_002242 myl10 coding downstream 382669 33171501 ~ 33179988 (+)
XLOC_002243 NA coding downstream 476549 33265381 ~ 33265687 (+)
XLOC_002244 NA coding downstream 568264 33357096 ~ 33359026 (+)
XLOC_002245 NA coding downstream 571496 33360328 ~ 33368165 (+)
XLOC_002234 NA non-coding upstream 418791 32259743 ~ 32264298 (+)
XLOC_002228 NA non-coding upstream 641243 31869282 ~ 32041846 (+)
XLOC_002252 NA non-coding downstream 1081357 33870189 ~ 33871012 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location