XLOC_002228


Basic Information

Item Value
gene id XLOC_002228
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31869282 ~ 32041846 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005720
agtaaatgttaagcatttgacCCAATTGGCGATGACCGCCTATGTAATTTACACAacattaagtgcagtgtgtgggtgagaggcAGTGTTTCGATCCTGTTATGTTGTTGTGACTGCTGGTGTTCCTTGCTGTTCAGTTAAAattatgacagttaaagtaactaggttaattgcgATTTAAATCGATAAAAAAATGTCAAGCTTTTAggctggaaaaagtcagctatatctggcaacacgtgtaaacaaactacaaacatggcgaaCACAGcccaaccgtcaagtagagaggctggTCAAGTTGTTTGAATGACAGTTAATcaaatatctagccaactggaacatGTTTAAACACgtcatctgcaacaacaacgtGAACTTATCAAGATATGTTTGGACGGTAAATTCTGCATGCAtaattacctaaaaaaaaaacaagatttctctgcatgaaagactcgtgaatggcaTGAAtgatcctgctgctgcttctccaaaaAGAGGGATTTAGACACCAGCTGTGAAACACCAGCTAATTACCTTGCTGGAGCTGTGGATTAGACCCAGATGAGGAGACAGGCCCGGACAGGCCCGATTTAGACCCACAACACAGTAACCAGAGTCATCCGTCGCTCTCTGGAGATGCAGGACATGTTTGCTGTTGAGTCGAGGGGCTGATACTTGTCCTTTAAGGAAAGGGGCAAATGACAGGAATCCAGTACTCCGAAATAAGGTTGAGAGCTACATTCTTCAAATCAGTGCATGATGTTCAGCGGCCTAATTGGCCATAATAATACAGCGTGTGAAACGTACGCCTGCAGCGCACAGCTGAGGATCAGATGGAGGAAAGGGCTCCTGCTGGCACAGCTGATATGGCCATTATCTGGATGTGGCTGAAGTGTCTGTCTGGGTCACACTTTGAAAAAGGACACAGAGCGCCAGCTGTCGTCCTGTTTCTCTGATTTATTCACTCGCTCTATGTTTCTCATCTCTCATCTCCACCTGATCATGTTCAAACAAGGTTTTATCCTTTGTTCTCTGGCACCACAAGACTTCATGCGTCATGATCGATCACATTGCTATCTGATTGGGTGTGTACATTAATACACTTGGCCAAATCAATTTTTAATGAGTG
>TCONS_00004275
CTTAAGTGACGTCAAATTAGAAACATCAGCAGCTTCTCAAGCAAAAGAACAATGGCCTGACTTTTTAATCTAATGAATGGGGGATGGCAAAATGACAAGCTTGCCGTCTCCTAATTGTATAGGTCTCTGTTCACAACCAAGACAAACAAGCAGCTACACAACTCATGCTCTGTGTAATTACAAGCTTGGGTTTAAAGATTAATGAAACAAGACCTTGAAAATGCGTGAACATGTAGAACTAAAAATGTGTCTGTTCTCCATTGTTTTCTTTGCAGGCGTGTGAAACGTACGCCTGCAGCGCACAGCTGAGGATCAGATGGAGGAAAGGGCTCCTGCTGGCACAGCTGATATGGCCATTATCTGGATGTGGCTGAAGTGTCTGTCTGGGTCACACTTTGAAAAAGGACACAGTGTAACCAAGCAGGAAGACGTCGGGAGGATCTGGGCCGGTGGGCTTAAGAGCTCTGTCTGTGCACTCAACCAGAAATCGGTGTCTTTTGCATCTAAACGAAAGCCTTAGAGTTTGAACCGAGCAGGATGGCATCCAGCCTTACATGTGCAGGTGTGATTTGGGCCCTGTTGTCGTTTCTTTGTGCTGCTACATCTTGTGTTGGCTTCTTCATGCCATATTGGCTGCTTGGGTCACAGATGGGTAAGCCAGTGTCATTTGGGACTTTTCGCCGCTGTTCATACCCCATAAGGGATGAGGCCCGTGGTGGGACTGTTATGTTGGAGCAATGTGGGCGCTACGCCTCCTTTCAGGGCATCCCAAGTCTGGAGTGGAGAATCTGCACGGTGGTGACAGGGATTGGATGTGGACTGCTGCTCCTGGTTGCTCTCACAGCAATAATGGGATGCTGTGTTACGGATCTAATCTCTCGCACCATAGGACGAGTGGCAGGAGGGATACAGTTTGTTGGAGGGCTGCTGATCGGGTCTGGATGTGCCCTGTACCCTTTAGGCTGGGACAGTGAAGAGGTCAGACAGACTTGCAGCAACAGTTCTGACCAGTTTGATCTTGGTTCTTGTGAGATCGGATGGGCTTATTACTGCACCGGGGCTGGAGCAGCGGCGGCCATGGTTTTGTGCACGTGGATGGCGTGTTTCGCAGGGAAGAAGCAGAAACACTATCCTTACTAAAGACAATAACTATGAACACTACATAATGTATATGGGCATGACTTCTACATCATGCTTCCTGAATGCATATATACAAAGACTCAAGACTGAACGTTGACCTTTCTGTGTCAGGTCCCAATTGAGATTTTCCCTTTGATTGACCTTTGACCTGCATCGGGATCTTTTGCATTTTAAGTGATGCCAGTATCAGTAATGGGAATATATCAGACGACCTATTGACTTTAATGTTCAAAAGGATCTACTGTATTACtctcatttatcttttttttagatTGTGTTTGTGTAAGTACGGTATTCTTGGTGGATTAAGTTGTTGTGTATCGGtacattgtattattataatatcctAGTCTATATAACGCGTTCATTTATGTCCTGTTATtgctttaaagtgatagttcaaccaaaaatttttttttactcactgtttactcatcctcaaacctttatgagttttgtttttctgctgaaacttattcattcattcattttcctttagcttagtccctttattcatcaggggtcgccacagcggaatgaaccaccaacttgtcttgtgcagcggatgcccttccagcagcaccctagtactgggaaacacgcatacactcttatattcatacactacggccaatttagttaatccaattacCTATagtacatgtgtttggactgtgagggaaacccatgccaacacgaggacatgcaaactccacacagaaatgccaactgacctagctgggactcgaaccactgatctccttgctgtgaggcgacaatgctaatcactgggccacctttttggagcttcatatgattataattaaagtcacatggaatattttgacaatattttaagcttgttttttagACTTTTCCTGTTTATAGAGGACgagagagctctctgatttcatctaaaatgtcttggtttgtgttctgaagatgaacgaagatCTCAGGGGTTTGACACGAAGGAGAGTAATTCATGAGAGAATATTCAGTTTTTGGTGATatctttgtgtgaactatccctttaaatgtctcAACTCCAAATAACACATCTCCAACAGACTGTATTTGCTAATAATTGTATGTTTGACAGTATATTGTGATCTTTGTTTGATATTTACAACTTTTATATAGCACATGCATACATGTCCATTATATTTCACcgcatttgtaaataaatactgtgATTTTAAAAACTAGTGGAATCATTTTGTATAGcgcttaaaaaatgtttatttggaTTGCTGATATTAAGTGCTCAACATGTATAAgtaaacccctcacaaatctcttgcttaaattaatattttctataggaagatTTACAATATTCTATTTATGCAAATGCAATAGATTAgtcactgaagccaaatctggaactaatctaacaaaatgtCTTATGATAACGGcccaaaattagtagcccaaatttatatgtttggaaaaaatattttttttaaatttaattttaaatttatatatttttttccaatattttgcacGACTTCTTTGAAtgtattttctttcaatttctaaaaatgtctggttactaaaatattattttaataaatatccctttaacaaatgtatgtagatcaaatggaccaaaatacactaagtagccactttattaggtacacctgtccaactgctcgttaacgcaaatttcttatcagccaatcacatggcagcaactcaatgcatttaagcatgtagacatggtcaagacgatctgctgcagttcaaactgagcatcagaatggggaagaaaggttatttaagtggctttgaatgtggcacggttgttggtgccagacgggctggtctgaatatttcagaaactgctgatctactgggattttcatgcacaaccatctctggaaTTTACATAAAATGGtccaaaatagagaaaatatccagtgagcggcagatctGTGGGCGCAAATTTTTTGATGATGCCAGATGTCAGAAGAGAATGGACTCCTCAGACTGGTTTAAGCTACAATTCGCTCACCAAAATTgcaaacattgcctggtctgacgagtctcggtttctgctgcgacattcggattgTAGGGTCAaaatctggcatcaacaacatgaaagcatggatccatcctgccttgtatcaatggttcaggctgcaggtggtggtgtaatggtgtgggggatatttttttggcacacttcgAACCCATTAGCACAATTTAAGCAcagtgtcaacgccacagcctacctgaataatgttgctgaccatatctatcactttatgaccacagtggacccatcttctgaaggctacttccagcaggataacgcaccatgtcatttcttgaacatgacaatgagttcactgtactcaaatggcctcctaaatcaccagatctcaatccaaaagaaCACAATTGGAcatggtggaatgggagatttgcatcatggatgtgcagccgacaaagcgtgatgctatcatgtcactatggaccaaaatctctgaggaatatttccagttgttgaatctatgccacgaaggattaaggctgttctgaaggcaaaagtgggtccaataCGCTATTAGtaagggtgtacctaataaagtgtccggtgagtgttTACCatccatattcactgagaaatagaaaataaaaatattcattttcaaaatggggtgtattcgtttatgttgagcactgtatatgcaaAGAGACTCACTCCTGATCTGCATGATCTGTGTATATTTAACCTGCGTGTATCTTTCTCTTTTAGAGTGATGGATTGCCTGGTGTTAATTTTCGACAGGGTGATGCAGTGCTGAAGTATCCGCCGCTAGAATGTGTAAGATGTAATGGGCGATCTGAAGTTATTGACGATCTGCTGTTCCCGTTTAGCACTATCAGCAAGGCTTCACACATGCGCTGCAGTCAGCTGTTGTTTTAGGAGTCCATGCAGCTCCTTAAGAAGATGAACTGATGCTGATAATCACAGCATTTCATCAAACCTCACCCTGGTTTACACACTTGACTGCGTGCAGGAAAGCTTCACAGTGTTTCCATTTTAATTACGTTAAATCTGTCAATGTGGAGAGCCGCGGTAAATGTAAGGTAGCAGAAAATCAATGCCACACGTGGTGGAGTTTTGACAAATGAATTGCTTTGGAGGGTTTTCACAGAAGACAAGCAGAATATGGGGGACTTGAGGGAAAACATGCTGTCTGTATGTATTAAGATCATCTTGCCACTGCTCTTTGTTTGTCCTTTACTTCAATGGTTTTGATAGACACTTTTTCTTTCCCTTTTCTTGAGTCAGGTAAGTGTTTATTAAAGGCATGATGTGTAACATTTTttcattaaaggtgctgtatgtaagtttttgactcttctaaagcataaaatccgataatatgtgtgcagatatttaagaaacatgccaagtgaacatacttgtttatctgaaaaacaatgctaaagtcagatattctgctttgttttCCATGGCGGAACACTCTTTGTTTTGGTAATATTAATACACCCCCCCATCCCAACCCCACAttgtcagtttagccaattatatatttcagaactccgggttgccttggtggaaaaccgtgtatttcatttattcattcaaaaagGCTTTCTAAGCATGCGCCTGTGACcgaatgcgacctctggtggacagtagcagactccgcaATGACACCCAGATTCAGAATTCCACATGATGAGGTTTTACTTagcaaattataaatattacCAACGCAAACAtttggtgagcaggttacattgtaacactgtgtcctaacaacacgctttgTGATGAGATATGCGTTGATAAGCAAtttagctgtttgcaccagacgaaacatgacaggaatttaaatacagcccttcagaagcacagaatatgcactcactcacgaaatggtaaTGTTTATAACCTATTTAATACACATTAatcctctttaacattattaaatgtacatgctgaatcacttgtGTTTAGTtttgaagttcaatttcaaaagGGTTTATGTcgtttttaagatctgaggttctgctgctgctttcagtaataAATGTCACGGAAAATTGCATTtgaactcacattattagcattgaaTACTGAATAAAGTATATGAGGTTTACCTGAGATGATTGTTGTcgttgttttctgttgttcagctgcaagaaatggaagccgtttctaatatatcaatttgaggtgttggtcagaacaaaaactccttttaatatggagaatattagTTTTATCGGatgccgttgcttttatatattttcaatCTGCAACCTGAGTTCGTTTTAAACCaggaccctgctgaaaaaatccagcttaaaccagcctaggctggttggctggttttagctggtcgaccaggctggttttagaggggttttggccacttccaggctggtttccagccatttccagcctggtcttagctggtcaggctggaaaatgaccagcttggtttaagctggatatagctagttttggctggactcccagcttgactaggctggtcaagctggttttagctggtcatctgccagcctgaccagctaagaccaggctggaaatggctggaaaccagcctggaagtggccaaaacccctcttaaaccagcctggttgaccagctaaaaccagccaaccagcttaggctggtttaagctggattgtTTTGCAGGGGAGTGCAATACATAGTTTAACCGGGTGTCAAATTTACATAGTGcacctttaaaatatttaaaaacaagtaga
>TCONS_00004276
CACTCGGTATAGTCACGGGCAGAGGCGTGCATGTGCTCGGCCAGTGAGTGGACTCTGGACGGCAGAGTTGAAGACTTTAGAGAGCTGCTAGGAGAGAACGGACAATCCACGCTGCATTGTGTCGTCTTTTCTGCGCTTTTGAGATTTGGAAGCAAGTGGAGTCGGATACAGCGAACGACACAGACATGTGTAACCAAGCAGGAAGACGTCGGGAGGATCTGGGCCGGTGGGCTTAAGAGCTCTGTCTGTGCACTCAACCAGAAATCGGTGTCTTTTGCATCTAAACGAAAGCCTTAGAGTTTGAACCGAGCAGGATGGCATCCAGCCTTACATGTGCAGGTGTGATTTGGGCCCTGTTGTCGTTTCTTTGTGCTGCTACATCTTGTGTTGGCTTCTTCATGCCATATTGGCTGCTTGGGTCACAGATGGGTAAGCCAGTGTCATTTGGGACTTTTCGCCGCTGTTCATACCCCATAAGGGATGAGGCCCGTGGTGGGACTGTTATGTTGGAGCAATGTGGGCGCTACGCCTCCTTTCAGGGCATCCCAAGTCTGGAGTGGAGAATCTGCACGGTGGTGACAGGGATTGGATGTGGACTGCTGCTCCTGGTTGCTCTCACAGCAATAATGGGATGCTGTGTTACGGATCTAATCTCTCGCACCATAGGACGAGTGGCAGGAGGGATACAGTTTGTTGGAGGGCTGCTGATCGGGTCTGGATGTGCCCTGTACCCTTTAGGCTGGGACAGTGAAGAGGTCAGACAGACTTGCAGCAACAGTTCTGACCAGTTTGATCTTGGTTCTTGTGAGATCGGATGGGCTTATTACTGCACCGGGGCTGGAGCAGCGGCGGCCATGGTTTTGTGCACGTGGATGGCGTGTTTCGCAGGGAAGAAGCAGAAACACTATCCTTACTAAAGACAATAACTATGAACACTACATAATGTATATGGGCATGACTTCTACATCATGCTTCCTGAATGCATATATACAAAGACTCAAGACTGAACGTTGACCTTTCTGTGTCAGGTCCCAATTGAGATTTTCCCTTTGATTGACCTTTGACCTGCATCGGGATCTTTTGCATTTTAAGTGATGCCAGTATCAGTAATGGGAATATATCAGACGACCTATTGACTTTAATGTTCAAAAGGATCTACTGTATTACtctcatttatcttttttttagatTGTGTTTGTGTAAGTACGGTATTCTTGGTGGATTAAGTTGTTGTGTATCGGtacattgtattattataatatcctAGTCTATATAACGCGTTCATTTATGTCCTGTTATtgctttaaagtgatagttcaaccaaaaatttttttttactcactgtttactcatcctcaaacctttatgagttttgtttttctgctgaaacttattcattcattcattttcctttagcttagtccctttattcatcaggggtcgccacagcggaatgaaccaccaacttgtcttgtgcagcggatgcccttccagcagcaccctagtactgggaaacacgcatacactcttatattcatacactacggccaatttagttaatccaattacCTATagtacatgtgtttggactgtgagggaaacccatgccaacacgaggacatgcaaactccacacagaaatgccaactgacctagctgggactcgaaccactgatctccttgctgtgaggcgacaatgctaatcactgggccacctttttggagcttcatatgattataattaaagtcacatggaatattttgacaatattttaagcttgttttttagACTTTTCCTGTTTATAGAGGACgagagagctctctgatttcatctaaaatgtcttggtttgtgttctgaagatgaacgaagatCTCAGGGGTTTGACACGAAGGAGAGTAATTCATGAGAGAATATTCAGTTTTTGGTGATatctttgtgtgaactatccctttaaatgtctcAACTCCAAATAACACATCTCCAACAGACTGTATTTGCTAATAATTGTATGTTTGACAGTATATTGTGATCTTTGTTTGATATTTACAACTTTTATATAGCACATGCATACATGTCCATTATATTTCACcgcatttgtaaataaatactgtgATTTTAAAAA
>TCONS_00004277
TAAACGAAAGCCTTAGAGTTTGAACCGAGCAGGATGGCATCCAGCCTTACATGTGCAGGTGTGATTTGGGCCCTGTTGTCGTTTCTTTGTGCTGCTACATCTTGTGTTGGCTTCTTCATGCCATATTGGCTGCTTGGGTCACAGATGGGTAAGCCAGTGTCATTTGGGACTTTTCGCCGCTGTTCATACCCCATAAGGGATGAGGCCCGTGGTGGGACTGTTATGTTGGAGCAATGTGGGCGCTACGCCTCCTTTCAGGGCATCCCAAGTCTGGAGTGGAGAATCTGCACGGTGGTGACAGGGATTGGATGTGGACTGCTGCTCCTGGTTGCTCTCACAGCAATAATGGGATGCTGTGTTACGGATCTAATCTCTCGCACCATAGGACGAGTGGCAGGAGGGATACAGTTTGTTGGAGGGCTGCTGATCGGGTCTGGATGTGCCCTGTACCCTTTAGGCTGGGACAGTGAAGAGGTCAGACAGACTTGCAGCAACAGTTCTGACCAGTTTGATCTTGGTTCTTGTGAGATCGGATGGGCTTATTACTGCACCGGGGCTGGAGCAGCGGCGGCCATGGTTTTGTGCACGTGGATGGCGTGTTTCGCAGGGAAGAAGCAGAAACACTATCCTTACTAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041212-82 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including cleithrum; head mesenchyme; median fin fold; pectoral fin bud; and segmental plate. Orthologous to several human genes including LHFPL6 (LHFPL tetraspan subfamily member 6).

Ensembl:

ensembl_id ENSDARG00000004363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005720 False 1135 lncRNA 0.43 5 31869282 31942176
TCONS_00004275 False 5928 mRNA 0.41 4 31938796 32041846
TCONS_00004276 False 2122 mRNA 0.43 4 31951338 32038263
TCONS_00004277 True 636 mRNA 0.53 3 31953502 32037058

Neighbor

gene id symbol gene type direction distance location
XLOC_002227 foxo1b coding upstream 7808 31809226 ~ 31861474 (+)
XLOC_002226 NA coding upstream 100329 31742998 ~ 31768953 (+)
XLOC_002224 esama coding upstream 142796 31646020 ~ 31726486 (+)
XLOC_002225 BX571852.1 coding upstream 176506 31692662 ~ 31692776 (+)
XLOC_002223 MSANTD2 coding upstream 234855 31624143 ~ 31634427 (+)
XLOC_002230 si:ch211-266i6.3 coding downstream 9060 32050906 ~ 32058078 (+)
XLOC_002231 thap12a coding downstream 16846 32058692 ~ 32064405 (+)
XLOC_002232 si:dkey-250d21.1 coding downstream 24509 32066355 ~ 32072789 (+)
XLOC_002233 wnt11 coding downstream 62459 32104305 ~ 32123204 (+)
XLOC_002234 NA coding downstream 217897 32259743 ~ 32264298 (+)
XLOC_002219 CR925737.1 non-coding upstream 881178 30978386 ~ 30988104 (+)
XLOC_002218 CR925809.1 non-coding upstream 1109238 30759929 ~ 30760044 (+)
XLOC_002217 BX957285.1 non-coding upstream 1133014 30736148 ~ 30736268 (+)
XLOC_002235 CR388187.1 non-coding downstream 353934 32395780 ~ 32395896 (+)
XLOC_002237 NA non-coding downstream 542571 32584417 ~ 32592071 (+)
XLOC_002241 CU929186.1 non-coding downstream 960473 33002319 ~ 33002433 (+)
XLOC_002243 NA non-coding downstream 1223535 33265381 ~ 33265687 (+)

Expression


Co-expression Network