XLOC_002230 (si:ch211-266i6.3)


Basic Information

Item Value
gene id XLOC_002230
gene name si:ch211-266i6.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32050906 ~ 32058078 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004278
GTCATCACCAATCGCAGAGCTCGCCGCGCCGAACTCAAATCTGTTGAAAAAGCGCGTGTTGTGCTTCAATCtccttcaaatatttttcaagttCAGGTTTGGCCTGAGTTTGAGGTTCGTGTCTTTCCTCGTTGACAGAAGAAGGCAGAGATAACGGGAAAGATTGTCATCTTTGAAGAACTGTCCTTACACTGGTAGATGAACATAATGGAGTCTGTGGTGAGAAAGAGAAACAAGGAGAACACTAAACCAGTTTCTGGCCTTAAAAAACAAGTCATCAGCAGTACTGCATCAAAACAAAGAGTCCTATGTAAAACGGCACCCCTTCAGTCAAAGAATGATTTAAAGGAGGATAACTCTGGAAAGAAGGGAAAGGATGTTAGAGCTCAGAACAAAAGTAATGATGCTGATCCTGCTAAGCGTTACACTCTAAGCCAGGCCTTTCGTACACAGCAGACTATAAGGCAACGAAAGCTTGTGGAAGAAGTTCAGAAACCACCTTCTACGGTCTCTGCTGTCCAGAAATCCAAACCTGGCACATATAAGGGCCGTGTGATACAGTCAAAAATCGATTGTTTCAGAAAACCCAGTGGGGACGTGAAGACCACAGAAAAGAAAGTGATTTCAAAACCGGATGAGACCAAAGCAAAACCTGAGGTGTCCAAAATTCGGTCAAAGTCTGTTACTTCTCTGCAAACCTCTATTAAACCTAGAGTCAACTCCGCTCTGTCATCCAGATCAAAATCGGTCTCTGATGTCCCTCGGAATGTCACTGAAAAACCAGTTCATAAGTCTGTTTCTCTTAAGCAAATACCTCAAAAGGTGCCAAGCTCCATCTCCCAAACAGGAGCCCACCGAGCTTGTGTTCTTCCTAGGCCAGCCCCTTTAGCTACAGGGCGCTCAGCCACCAACAAAGCCTTCACTATGAAGAAGAAGGTACCTGTGCAGGTGCCAAAACCCAAGCCCCCTCTCACTGATCAAAACGTCAGCAGGCCTGTCACAAGTACAGTCAGCCAGTACAAAGTACAAATGGAAACGGCTGAAGAAAGAAGAGCAAAGCTTGCAGAGTGGCTGGCTTCTAAAGGAAAGTCTCTAAAGAGACCTCCGATCTCAGACAACTCAGCTGTGCTTTCACGGAAACCAGCTCCACAGCCTAAACCTGGACCCAAAGCTACTACCTGTGCCCAATCGAAGCCTGTCATGCAGAAGACAGAGCCTGTAAAACCAGCCCCTGCATTGAAGACCAGCAACCAAACTGATAAAGTCCCTGGCACAAAACCAGTGAATACAAGTGAATCAAGCAATATTATGAATACTACATTAGACTTGCTGGACAATAGTGACATGGATCTGCCAGTTGACCCAGAGATAAGAATGGAGTCGCTGGTGATGAACTTGTGTGATAAACTGGAGGCGATGGAAACACCCTCATCTTGTGAGGATGCTATGAATGCTGACGAATGTGATGCACCGGCAGATAAAAGAATGGAAATGCAAGTAGAGGAGCACACAACAGATAGAGTGTTTGAAATTCTAGAAGAGGAAGAACTTGGGGATGAGGAAGACATTACTGATGACATTAAAAAGGCTGACATAAAGAATGAGGATGATCTGGAACCTCAGGAGAAGAAACTATTTGATAGTGAAGATGATGATGGCGAGGAGATGAGGTGTACCACTCCAGAGACGGAAGGAGCATCCATTGtgaaatacaatgtaaaaactaCTCCTTATCTGCAAAGTGTAAAAAAGAGAATCGAATGCGAGGAGGCACCAGGCAGTGGCTCTCGACGCAAAAGCACCATTAAAGACCTCAAGTTTCTGACACCGGTTCGACGATCAACAAGAATCCAACGCAAGTCCTCTCGTCTGCCAGGTATGCTGAACGATCACGACACTTGCGTCTCCTCGTTGGCTGAGCTGGTACAGATGGAAGATGCCGATGCGAATGCTTACATCTACAGAAAAAACCCAGCACTACTGGaagacttgcctaatcaccctggAGACTTGGCAAAAGTATGCAGTTAAACAAAATGAGTCTCTTTGAAATTGCACATTTATAGCTTATGTAATGGCTGCATTTTAAGGTATTCTTTGTGAcactaaaaaataatttaatatttaactgttTGCATTGTGCTGCTACTACATAGAGTAATATCTTAATGTCTGCTTGACAATATGACTTTAGGCACTTCTGTCAGCATCTTCTGTGCTTGCATAAggcttatgtttgtgtgtgtgtgtatatatatgaaaagcTATTTCTGTGCCTTGTACCACTTTATTATAACTGCTTTGTTCATTTTATAAATGTGGAAGatgaaaaaattgtaaaaagtaaGATTTGTTTTGGCAAGTATCGAAtttaacaaaccaaaaaaaatttcCCTTTTCTTAACTTGCATTTGTTTTTCTCCAAGATACTTCCAGTACTGCAAATGT

Function

symbol description
si:ch211-266i6.3 Predicted to be involved in negative regulation of microtubule depolymerization. Predicted to be located in cytoplasm. Predicted to be active in microtubule cytoskeleton. Orthologous to human CKAP2 (cytoskeleton associated protein 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5420 Predicted to be involved in negative regulation of microtubule depolymerization. Predicted to be located in cytoplasm. Predicted to be active in microtubule cytoskeleton. Orthologous to human CKAP2 (cytoskeleton associated protein 2).

Ensembl:

ensembl_id ENSDARG00000086112

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004278 True 2448 mRNA 0.43 7 32050906 32058078

Neighbor

gene id symbol gene type direction distance location
XLOC_002228 NA coding upstream 9060 31869282 ~ 32041846 (+)
XLOC_002229 NA coding upstream 102362 31946837 ~ 31948544 (+)
XLOC_002227 foxo1b coding upstream 189432 31809226 ~ 31861474 (+)
XLOC_002226 NA coding upstream 281953 31742998 ~ 31768953 (+)
XLOC_002224 esama coding upstream 324420 31646020 ~ 31726486 (+)
XLOC_002231 thap12a coding downstream 614 32058692 ~ 32064405 (+)
XLOC_002232 si:dkey-250d21.1 coding downstream 8277 32066355 ~ 32072789 (+)
XLOC_002233 wnt11 coding downstream 46227 32104305 ~ 32123204 (+)
XLOC_002234 NA coding downstream 201665 32259743 ~ 32264298 (+)
XLOC_002235 CR388187.1 coding downstream 337702 32395780 ~ 32395896 (+)
XLOC_002225 BX571852.1 non-coding upstream 358130 31692662 ~ 31692776 (+)
XLOC_002219 CR925737.1 non-coding upstream 1062802 30978386 ~ 30988104 (+)
XLOC_002237 NA non-coding downstream 526339 32584417 ~ 32592071 (+)
XLOC_002241 CU929186.1 non-coding downstream 944241 33002319 ~ 33002433 (+)
XLOC_002243 NA non-coding downstream 1207303 33265381 ~ 33265687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15462162_15465511 NA coding CI01000304 null 15462162 ~ 15465511 (+)