XLOC_002250 (b3glctb)


Basic Information

Item Value
gene id XLOC_002250
gene name b3glctb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33626344 ~ 33710227 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004301
ATTTCTGGAATCTGACGAATTCATTTGTGCTCCATGTTTCTGCAACGGGCGTGATACTGACAGACTGAGCCCCACAAAGACATGTCTAGATACACTGCTGGACACAATGTCATATATTTCTGCTGCTCCCTACTCTCCTTTGTGCCTTCTTGCAATGCTTTAAACGACGATAGATGTGAAAAACCTCCAAGAAGTGGCGCAGAAATGTATGGCCGACATATTGAACTGCGGGATGTGTTATTTGTGATACAGAGTCAGAGAAACTCATATCACACCCAGAGGGCCGAACAAAGAAGAAAAGAAATTCTCCATCAGGCTCAGACTGTAACCCAGAGTTCACCAGATGTTGTGCTCCTTCACAAGCTGTCACACTATGATGGAAACTGGAGCATTCTTCCGGCACTGccacgCCTTGCCTTGCAGTACTGTCAAACATCTTTGTGGATTATGTTCTTGCAAGAAGAGACTATCGTGAACTTGCACAACCTTCTGCAGGTGCTGAGCAGATTCAGCCCAGGAAAGGAGTGGTTTCTGGGCAGATCCCTCCATGATGATGAACCAACAATCATCCACCACTATGCTTTCTCAGAAGACCCCTACAGCTTCGCTTACCCTGACTTCATGGCTGGCTGGGCCATCAGCTGCCCCTTGGCTAAGCGAACTGCAGAACGTGTGAATTATGAGCCTCCCAAATCGGATTTTACGATTGACCTTCAACATGAGATTGCCCTCTACATTTGGGAGGAAGGGAGAGGTCCTACTTTGACTGCAGTGAATGAGTTTTGTTCAGAGCTTCACGGCTCGTCCTCCGCAAAATGCTGTGCTACAGCCGTCAACACCTACTTATCGGCTTGTGGAAAACCTGTGCTGAAGGAGGACGTCTTTGTTGCTGTTAAAACATGCCAAAGATTTCACAGAGATAGAGTTCCTATAGTTAAACAGACATGGGAAAAAGATGCTGCCTCGCTGGAATACTACAGTGACGTCACAGACTCAATTATCCCCACAGTCCACTTGGGAGTCCCTAACACAGAGAGAGGGCACTGTGAAAAAACATTTGCCATCCTGAGAAGGTTTGCCAGTGGAGCAGTAACACAAGCACCATGGCTGCTTATAGTGGATGACGACACACTGATCAGTCTGCCCAGACTGCGGAGGCTTCTGAGCTGTTATGATCCAACTGAAGCTGTGAGTGTTGGAGAACGTTACGGCTATGGGCTTAGCAGGGATGGCTACAGCTACATCACAGGAGGTGGAGGGATGGTGTTCAGTAGAGTCGCTGTTCAGAATATTCTGGCAGGTGGTTGCAGCTGCCGCAGTTCAGACGCCCCTGATGATATGGTGTTAGGGATGTGTCTGACCACATTGGGGCTCCCAGTCACACACAGCCCACTTTTCCATCAGGCCCGTCCAGATGATTATGTGAAAGAGCTTCTGGCACGGCAGAGTCCAATCTCCTTCCACAAACACTGGAACATCAAGCCTGTGGCCGTTTACCAGCGCTGGCTTTCAGAGCCTGACCAGAGACCACACTGGCTCACAGACACCAGAGAGGAGCTGTAGACCAAGcatatgagtgagtgtgtgtgtgtgtgtgtgttcgtgttcaAACATTCATTTGAAATCCTAGAATTCAAAGGCACCATAAATTAAAATGTACCTGGTATATAAACACATTCATTATCTTACTTTGagctatatatttgtttatgtttctcCAAACATTCATCATGTAAAATGTTTTTGACCTTGTTTTTCCTCATGAATGTTTTATTCAGGAGTGTATTATGTTAAATTAGGTGAATTAGGTTAGATTGACTGTCATATTCTACACTGAAAATGCATACATGCAATAAACTCAAATAACTTTTA
>TCONS_00004302
ATGTCtgcctcggctgcatcagataaacagcacagtgacagacataaaggaaagcagatctcacAACTGCGGGATGTGTTATTTGTGATACAGAGTCAGAGAAACTCATATCACACCCAGAGGGCCGAACAAAGAAGAAAAGAAATTCTCCATCAGGCTCAGACTGTAACCCAGAGTTCACCAGATGTTGTGCTCCTTCACAAGCTGTCACACTATGATGGAAACTGGAGCATTCTTCCGGCACTGccacgCCTTGCCTTGCAGTACTGTCAAACATCTTTGTGGATTATGTTCTTGCAAGAAGAGACTATCGTGAACTTGCACAACCTTCTGCAGGTGCTGAGCAGATTCAGCCCAGGAAAGGAGTGGTTTCTGGGCAGATCCCTCCATGATGATGAACCAACAATCATCCACCACTATGCTTTCTCAGAAGACCCCTACAGCTTCGCTTACCCTGACTTCATGGCTGGCTGGGCCATCAGCTGCCCCTTGGCTAAGCGAACTGCAGAACGTGTGAATTATGAGCCTCCCAAATCGGATTTTACGATTGACCTTCAACATGAGATTGCCCTCTACATTTGGGAGGAAGGGAGAGGTCCTACTTTGACTGCAGTGAATGAGTTTTGTTCAGAGCTTCACGGCTCGTCCTCCGCAAAATGCTGTGCTACAGCCGTCAACACCTACTTATCGGCTTGTGGAAAACCTGTGCTGAAGGAGGACGTCTTTGTTGCTGTTAAAACATGCCAAAGATTTCACAGAGATAGAGTTCCTATAGTTAAACAGACATGGGAAAAAGATGCTGCCTCGCTGGAATACTACAGTGACGTCACAGACTCAATTATCCCCACAGTCCACTTGGGAGTCCCTAACACAGAGAGAGGGCACTGTGAAAAAACATTTGCCATCCTGAGAAGGTTTGCCAGTGGAGCAGTAACACAAGCACCATGGCTGCTTATAGTGGATGACGACACACTGATCAGTCTGCCCAGACTGCGGAGGCTTCTGAGCTGTTATGATCCAACTGAAGCTGTGAGTGTTGGAGAACGTTACGGCTATGGGCTTAGCAGGGATGGCTACAGCTACATCACAGGAGGTGGAGGGATGGTGTTCAGTAGAGTCGCTGTTCAGAATATTCTGGCAGGTGGTTGCAGCTGCCGCAGTTCAGACGCCCCTGATGATATGGTGTTAGGGATGTGTCTGACCACATTGGGGCTCCCAGTCACACACAGCCCACTTTTCCATCAGGCCCGTCCAGATGATTATGTGAAAGAGCTTCTGGCACGGCAGAGTCCAATCTCCTTCCACAAACACTGGAACATCAAGCCTGTGGCCGTTTACCAGCGCTGGCTTTCAGAGCCTGACCAGAGACCACACTGGCTCACAGACACCAGAGAGGAGCTGTAG
>TCONS_00004303
ATGGAACGCTAGGTGAAACACAGTAAAAGGGGCACAGGTATACGGTTGTTTCACGGATTCCTCCTTCATGAGGTATAGCTCCTGGTTTGAGGGAAAAataagGATGGTGTTCAGTAGAGTCGCTGTTCAGAATATTCTGGCAGGTGGTTGCAGCTGCCGCAGTTCAGACGCCCCTGATGATATGGTGTTAGGGATGTGTCTGACCACATTGGGGCTCCCAGTCACACACAGCCCACTTTTCCATCAGGCCCGTCCAGATGATTATGTGAAAGAGCTTCTGGCACGGCAGAGTCCAATCTCCTTCCACAAACACTGGAACATCAAGCCTGTGGCCGTTTACCAGCGCTGGCTTTCAGAGCCTGACCAGAGACCACACTGGCTCACAGACACCAGAGAGGAGCTGTAGACCAAGcatatgagtgagtgtgtgtgtgtgtgtgtgttcgtgttcaAACATTCATTTGAAATCCTAGAATTCAAAGGCACCATAAATTAAAATGTACCTGGTATATAAACACATTCATTATCTTACTTTGagctatatatttgtttatgtttctcCAAACATTCATCATGTAAAATGTTTTTGACCTTGTTTTTCCTCATGAATGTTTTATTCAGGAGTGTATTATGTTAAATTAGGTGAATTAGGTTAGATTGACTGTCATATTCTACACTGAAAATGCATACATGCAATAAACTCAAATA

Function

symbol description
b3glctb Enables glycosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; fin; head; heart; and trunk. Human ortholog(s) of this gene implicated in Peters plus syndrome. Orthologous to human B3GLCT (beta 3-glucosyltransferase).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-128 Enables glycosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; fin; head; heart; and trunk. Human ortholog(s) of this gene implicated in Peters plus syndrome. Orthologous to human B3GLCT (beta 3-glucosyltransferase).

Ensembl:

ensembl_id ENSDARG00000077740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004301 False 1872 mRNA 0.46 15 33626344 33710227
TCONS_00004302 False 1404 mRNA 0.50 13 33627429 33709918
TCONS_00004303 True 708 processed_transcript 0.43 3 33702442 33710220

Neighbor

gene id symbol gene type direction distance location
XLOC_002249 mis18a coding upstream 32234 33588715 ~ 33594110 (+)
XLOC_002248 cfap298 coding upstream 47182 33573838 ~ 33579162 (+)
XLOC_002247 ryr1a coding upstream 86008 33406819 ~ 33540336 (+)
XLOC_002246 mdh2 coding upstream 222822 33382858 ~ 33403522 (+)
XLOC_002245 NA coding upstream 258179 33360328 ~ 33368165 (+)
XLOC_002251 rxfp2a coding downstream 33871 33744098 ~ 33867426 (+)
XLOC_002252 NA coding downstream 159962 33870189 ~ 33871012 (+)
XLOC_002253 fryb coding downstream 185088 33895315 ~ 33999781 (+)
XLOC_002254 kl coding downstream 291217 34001444 ~ 34026125 (+)
XLOC_002255 BX548044.4 coding downstream 325462 34035689 ~ 34043319 (+)
XLOC_002244 NA non-coding upstream 267318 33357096 ~ 33359026 (+)
XLOC_002243 NA non-coding upstream 360657 33265381 ~ 33265687 (+)
XLOC_002241 CU929186.1 non-coding upstream 623911 33002319 ~ 33002433 (+)
XLOC_002237 NA non-coding upstream 1034273 32584417 ~ 32592071 (+)
XLOC_002257 BX548044.5 non-coding downstream 398314 34108541 ~ 34120301 (+)
XLOC_002258 BX548044.1 non-coding downstream 414194 34124421 ~ 34147245 (+)
XLOC_002259 BX548044.2 non-coding downstream 441059 34151286 ~ 34171425 (+)

Expression


Co-expression Network