RNA id: TCONS_00004302


Basic Information

Item Value
RNA id TCONS_00004302
length 1404
RNA type mRNA
GC content 0.50
exon number 13
gene id XLOC_002250
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33626344 ~ 33710227 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCtgcctcggctgcatcagataaacagcacagtgacagacataaaggaaagcagatctcacAACTGCGGGATGTGTTATTTGTGATACAGAGTCAGAGAAACTCATATCACACCCAGAGGGCCGAACAAAGAAGAAAAGAAATTCTCCATCAGGCTCAGACTGTAACCCAGAGTTCACCAGATGTTGTGCTCCTTCACAAGCTGTCACACTATGATGGAAACTGGAGCATTCTTCCGGCACTGccacgCCTTGCCTTGCAGTACTGTCAAACATCTTTGTGGATTATGTTCTTGCAAGAAGAGACTATCGTGAACTTGCACAACCTTCTGCAGGTGCTGAGCAGATTCAGCCCAGGAAAGGAGTGGTTTCTGGGCAGATCCCTCCATGATGATGAACCAACAATCATCCACCACTATGCTTTCTCAGAAGACCCCTACAGCTTCGCTTACCCTGACTTCATGGCTGGCTGGGCCATCAGCTGCCCCTTGGCTAAGCGAACTGCAGAACGTGTGAATTATGAGCCTCCCAAATCGGATTTTACGATTGACCTTCAACATGAGATTGCCCTCTACATTTGGGAGGAAGGGAGAGGTCCTACTTTGACTGCAGTGAATGAGTTTTGTTCAGAGCTTCACGGCTCGTCCTCCGCAAAATGCTGTGCTACAGCCGTCAACACCTACTTATCGGCTTGTGGAAAACCTGTGCTGAAGGAGGACGTCTTTGTTGCTGTTAAAACATGCCAAAGATTTCACAGAGATAGAGTTCCTATAGTTAAACAGACATGGGAAAAAGATGCTGCCTCGCTGGAATACTACAGTGACGTCACAGACTCAATTATCCCCACAGTCCACTTGGGAGTCCCTAACACAGAGAGAGGGCACTGTGAAAAAACATTTGCCATCCTGAGAAGGTTTGCCAGTGGAGCAGTAACACAAGCACCATGGCTGCTTATAGTGGATGACGACACACTGATCAGTCTGCCCAGACTGCGGAGGCTTCTGAGCTGTTATGATCCAACTGAAGCTGTGAGTGTTGGAGAACGTTACGGCTATGGGCTTAGCAGGGATGGCTACAGCTACATCACAGGAGGTGGAGGGATGGTGTTCAGTAGAGTCGCTGTTCAGAATATTCTGGCAGGTGGTTGCAGCTGCCGCAGTTCAGACGCCCCTGATGATATGGTGTTAGGGATGTGTCTGACCACATTGGGGCTCCCAGTCACACACAGCCCACTTTTCCATCAGGCCCGTCCAGATGATTATGTGAAAGAGCTTCTGGCACGGCAGAGTCCAATCTCCTTCCACAAACACTGGAACATCAAGCCTGTGGCCGTTTACCAGCGCTGGCTTTCAGAGCCTGACCAGAGACCACACTGGCTCACAGACACCAGAGAGGAGCTGTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-128 Enables glycosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; fin; head; heart; and trunk. Human ortholog(s) of this gene implicated in Peters plus syndrome. Orthologous to human B3GLCT (beta 3-glucosyltransferase).

Ensembl:

ensembl_id ENSDART00000138542

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005724 lncRNA upstream 259264 33363402 ~ 33368165 (+) True XLOC_002245
TCONS_00004293 lncRNA upstream 263321 33362166 ~ 33364108 (+) False XLOC_002245
TCONS_00005723 lncRNA upstream 264849 33360328 ~ 33362580 (+) False XLOC_002245
TCONS_00004292 lncRNA upstream 264849 33361020 ~ 33362580 (+) False XLOC_002245
TCONS_00005722 lncRNA upstream 268403 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00005725 lncRNA downstream 160271 33870189 ~ 33871012 (+) True XLOC_002252
TCONS_00005916 lncRNA downstream 347373 34057291 ~ 34058317 (+) False XLOC_002256
TCONS_00005917 lncRNA downstream 480624 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005918 lncRNA downstream 529142 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005919 lncRNA downstream 1344393 35054311 ~ 35058561 (+) True XLOC_002269
TCONS_00004300 mRNA upstream 33319 33588715 ~ 33594110 (+) True XLOC_002249
TCONS_00004298 mRNA upstream 48267 33573838 ~ 33579162 (+) False XLOC_002248
TCONS_00004299 mRNA upstream 48267 33573874 ~ 33579162 (+) True XLOC_002248
TCONS_00004297 mRNA upstream 87093 33406819 ~ 33540336 (+) True XLOC_002247
TCONS_00004296 mRNA upstream 228890 33393883 ~ 33398539 (+) True XLOC_002246
TCONS_00004304 mRNA downstream 34180 33744098 ~ 33867426 (+) False XLOC_002251
TCONS_00004305 mRNA downstream 45049 33754967 ~ 33866812 (+) True XLOC_002251
TCONS_00004306 mRNA downstream 185397 33895315 ~ 33997136 (+) False XLOC_002253
TCONS_00004307 mRNA downstream 192346 33902264 ~ 33912203 (+) False XLOC_002253
TCONS_00004308 mRNA downstream 272092 33982010 ~ 33999781 (+) False XLOC_002253
TCONS_00004290 other upstream 624996 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004283 other upstream 1231533 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004273 other upstream 1934653 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 2867385 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 2891161 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004313 other downstream 325771 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 337442 34047360 ~ 34058765 (+) False XLOC_002256
TCONS_00004316 other downstream 357961 34067879 ~ 34086349 (+) False XLOC_002256
TCONS_00004318 other downstream 398623 34108541 ~ 34120301 (+) True XLOC_002257
TCONS_00004319 other downstream 414503 34124421 ~ 34147245 (+) True XLOC_002258

Expression Profile

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