RNA id: TCONS_00004304


Basic Information

Item Value
RNA id TCONS_00004304
length 2900
RNA type mRNA
GC content 0.45
exon number 18
gene id XLOC_002251
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33744098 ~ 33867426 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gTGCAGATGAGATTCCCTTTCCAGCTGCTAGTTCatgaataacatttatttgtggACGTGCATGGTGATAATCCATTACAAGACACCATGGTTTAGTCCTCTGTTAAAGCATCCATGATGGCCACCAGGGCGATGACAGAAGGTTGCCCTCTCGGCCAGTTTCCCTGTGGgaacatgagtgtgtgtttgcctCAGGTCCTTCAGTGTAACGGCCACAAGGACTGCAAAAATGGCGCAGATGAAGAACATTGCGGCGACAACAGCGGATGGGCGGATATCTTTGATCGCACTATTAAAAAGGCAGAGCCACAGGACCTTCCTAATGACTGCTATCTGCAGCAATACCCGCAAAGCTGTTCGTGCAAAAAGACGGAGGTGGAATGTGTGGACGTGAACCTGCATGTCGTCCCCATCCTCTCTTCCAATGTGACTTGGTTGTCTCTGAAGAACAACAGGATCAGGAATTTGGATGATTACATCTTCTCCAAATACACACAAATGCAGAGACTATTTCTTCAAAACAACATCATCGAGACGGTCTCAAGCCGAGCCTTCAGTAGATTATTCACTCTACAGAGACTGTTTCTCAGCCAAAACAACATAACCTATTTAGGACCGGGTGTATTCAGAGATCTACACAAGCTAGACTGGCTAGTCTTAGACCACAATCCTCTTAAACACATCACCCGTGATACATTCATCGGTCTGAGGTCCCTGACATATCTGTCTATGGTGAATGTGTCTCTGATGCGGCTTCCCAATTCCAGTCTCTGTCAGCACATGCCTCTGCTCACTTGGCTGGACTTTGCGGAGAATGACGTTGAGTTGCTGAATTATTCCACTCTGATGACATGCACAGAGCTCACAGTGCTaACATTTCATGACAATAATATCAAGACCCTTCCAGAAAACACCTTTCATTCTCTTGGATCACTGGCTGAACTAGATCTGTCCTGCAACAGGATTTCCAAACTTCCTAAAAACACTTTCAAGAGTTTGAAATATCTGAAGAAATTGAACATATCCCACAATCCTTTGCTCCATATTCACACCGGGCACTTCGATCACCTGGTGCAGCTTCAGTCTCTgagtCTGGAGGGCATTGAAATTCCTAATATAACCACCAAGATGTTTCTTCCGATGGGGAATCTGTCCCACATatattttaaagactttCAGTACTGTTCCTATGCGCCACATGTACGGAAATGCAAACCTAACACCGATGGGATTTCGTCAGTGGAAGACCTGTTAGCCAGCCTGGTTCTGCGGGTGTCTGTGTGGGTTATGGCCTTCATCACATGCTTTGGGAATCTCTTTGTTATCGGGATGCGCTCTTTCATTAGAGCCGAGAACAATCTGCATGCAGCCTGCATCAAAGTCCTCTGCTTTGCCGACTGTCTTATGGGAGTCTACCTTTTCTTCCTGGGGATATTTGATGTGAAATTCCGTGGCGAATACAACCGGAACGCTCTGATCTGGATGGACAGCGTTGAATGCCGAACAATTGGCTTTCTCGCCATGCTCTCCTCTGAAGTCTCGGTTCTCCTCCTCACCTACTTGACATTAGAGAAATTCCTTGTCATTGTTTTCCCGTTTAGCCATTTGAGACCTGCCAAGCTGCAGACGGTGCTGATTCTGGCTTTCATCTGGTTTCTGGGATTTGTCATAGCAGCTGTTCCCTTGTTAAACGAAGACTTGTTTGGGAATTATTACGGCAGGAATGGAGTTTGTTTCCCTCTCCACTCCGATAGGCTGGAGAAACCAACGGCCAAAGGATACTCCACTGGGATATTTCTTGGTCTTAATCTGGTGGCGTTCCTGGTGATCGTCATTTCCTACTCCAGCATGTTTTGCTCCATTTATAAAACGGGCATCAACGCCACAGATGTGCGCAGTCGGCTACACAAGGATGTGGCTGTGGCGAATCGCTTTTTCTTTATTGTGTTCTCTGACGCCCTCTGCTGGATACCCATATTTTTGGTCAAAACTCTCTCTCTGATGAAGGTTGAGATTCCAGGGACGATTAACTCCTGGGTGGTGATCTTCATTCTCCCTATAAACAGCGCCCTTAACCCCATCCTCTACACCCTGACCACCAGCTTCTTCAGAGAGCAGGTGGAGCTGCTCCTTTGCCGCTGGCAGCGTCGCTCTGCCACAAAGAAAGACCGCAAGAGCGTCACCAGCTCCACCATCTACATGGAGACCTCACGAAATCCTGAATACCCTGCAAAGAATTCTTTACCACGACTGTCTTTGGCTGACATGGACAACCAATATGGGTGAAAGAGCCGGAAGGTATCGTAGCGTAGGTCTATCATAATCATTATCTCCATTCAGACCGGAGAATGACAGGCTTTCCTGGAACAATTTAAGTGAAAGGATGGCGCTGTGATTCCTGCCGTTCGGGATCAGAAATGGAGAGCTCTTTGTAGACGCATGACTGTAGCTACACTGTTTTCTCCATTAGGAGAAGCATTTTTATTCACTTAAGCTGAGATAAGAGCCTCAGATCCCTCCAGCGGCCATTACCAACAGCTAAACAGCATGTCTGGCTCACAAATGTTGAGCTCGGCTTGttgtttgtcaaaaaaaaaaaaaaacttctggggAAGTAAAACTGCAGAAACAACGCACAAGACTGCAGTAGCACATCTTTTAGATatcaaaaataactttaaagcATCATTTACATGaaggacttttattttttaaatgtgatggGTTTTGGGAATGAAGTTATTTGTAATGTATGGGTTTTTATGCTTGCTCTGCCATGTCACAGAAAAGGCATATTAAGAGGGATTGTCTTTGCCAACAGTGTGCAACAAAAAATGACGACTCAAATGAAAAGAAGCATGCAAGATGAAAAGGTGCACACCATTCAGCTGTATAAGATA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1225 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in activation of adenylate cyclase activity; adenylate cyclase-activating G protein-coupled receptor signaling pathway; and hormone-mediated signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in female organism; male organism; and ovary. Human ortholog(s) of this gene implicated in cryptorchidism. Orthologous to human RXFP2 (relaxin family peptide receptor 2).

Ensembl:

ensembl_id ENSDART00000147775

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005724 lncRNA upstream 375933 33363402 ~ 33368165 (+) True XLOC_002245
TCONS_00004293 lncRNA upstream 379990 33362166 ~ 33364108 (+) False XLOC_002245
TCONS_00005723 lncRNA upstream 381518 33360328 ~ 33362580 (+) False XLOC_002245
TCONS_00004292 lncRNA upstream 381518 33361020 ~ 33362580 (+) False XLOC_002245
TCONS_00005722 lncRNA upstream 385072 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00005725 lncRNA downstream 2763 33870189 ~ 33871012 (+) True XLOC_002252
TCONS_00005916 lncRNA downstream 189865 34057291 ~ 34058317 (+) False XLOC_002256
TCONS_00005917 lncRNA downstream 323116 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005918 lncRNA downstream 371634 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005919 lncRNA downstream 1186885 35054311 ~ 35058561 (+) True XLOC_002269
TCONS_00004301 mRNA upstream 33871 33626344 ~ 33710227 (+) False XLOC_002250
TCONS_00004302 mRNA upstream 34180 33627429 ~ 33709918 (+) False XLOC_002250
TCONS_00004300 mRNA upstream 149988 33588715 ~ 33594110 (+) True XLOC_002249
TCONS_00004298 mRNA upstream 164936 33573838 ~ 33579162 (+) False XLOC_002248
TCONS_00004299 mRNA upstream 164936 33573874 ~ 33579162 (+) True XLOC_002248
TCONS_00004306 mRNA downstream 27889 33895315 ~ 33997136 (+) False XLOC_002253
TCONS_00004307 mRNA downstream 34838 33902264 ~ 33912203 (+) False XLOC_002253
TCONS_00004308 mRNA downstream 114584 33982010 ~ 33999781 (+) False XLOC_002253
TCONS_00004309 mRNA downstream 123146 33990572 ~ 33996900 (+) True XLOC_002253
TCONS_00004310 mRNA downstream 134018 34001444 ~ 34021856 (+) False XLOC_002254
TCONS_00004303 other upstream 33878 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004290 other upstream 741665 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004283 other upstream 1348202 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004273 other upstream 2051322 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 2984054 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004313 other downstream 168263 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 179934 34047360 ~ 34058765 (+) False XLOC_002256
TCONS_00004316 other downstream 200453 34067879 ~ 34086349 (+) False XLOC_002256
TCONS_00004318 other downstream 241115 34108541 ~ 34120301 (+) True XLOC_002257
TCONS_00004319 other downstream 256995 34124421 ~ 34147245 (+) True XLOC_002258

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_16315830_16336387.mRNA True 3138 mRNA 0.42 14 CI01000304 16315168 ~ 16336928 (+)