RNA id: TCONS_00004293


Basic Information

Item Value
RNA id TCONS_00004293
length 889
lncRNA type lincRNA
GC content 0.39
exon number 2
gene id XLOC_002245
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 33360328 ~ 33368165 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttgttattttttccatTAATATAATCACATTTGCAGTGTTTCTATTGATATCTGGCATGTCTTTTCAGACAAACACCTCTGTGTCCAGCATCCTGCGGTCTCCAGCGATAAAAGATGCATCTAAGCCGGAAACAGACTCTCCTTCCAGCGCAAATGCAGAGTTCACCACTGCCAGCTCTGGAGCCAGACAGACCACCGAGAGTAGCCAAGGAACAAATGAAGAGACGGAGCAGCCTGTTGAACAAAACAATGATGTGGATGAGAAACGTGAAGACCAGTCAGATTGTGAACATCTGTGTGAGAAAGATGCTTATGATGAGGAGCGATTTGATGATGACGGGATCTCAGAGAGAAAGGAAGAGTGTGAAGGTGAAAACCAGTGTCAGAATGATTGATGATAGATCTATAGCAGGACTTGAAGTGATGAGCATTTGTGGTTACAGACCGGCATGGAGATCTCAACTGGGCTGATGTGGACACTAATACAGACTCTCAAAAAAGCAATAAGAGTCCCAGTCTTGATGAAACTGAGAGGTAAAACACTATATACAAAAAAGTACATGCAGAATTATTTTACAGCTGTTTGGATAGAGAAAAGCATCTGAATTTAACGTGATATTGTCCTCTGAGGTGTTCAGAAGtgaaataagtataaaatataaaagtgaaaACAGAAATTATAGTGACAttgactgtaaacatttattgtgtatgtcaAGCTTAAAGgcgtagttcacctaaaaatgaacattctgtcatcatttacttatcctccccttgttccaaacctgtttgagtttttttttctttctgttgaatACTATTGATGAtaaactgaagaatgttgggggggaaaggtcattgacttccatagtattgttttccta

Function

GO:

id name namespace
GO:1902299 pre-replicative complex assembly involved in cell cycle DNA replication biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009052 pentose-phosphate shunt, non-oxidative branch biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0036388 pre-replicative complex assembly biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0033260 nuclear DNA replication biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0042555 MCM complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0070035 obsolete purine NTP-dependent helicase activity molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005721 lncRNA upstream 3140 33357096 ~ 33359026 (+) False XLOC_002244
TCONS_00005722 lncRNA upstream 3140 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00005915 lncRNA upstream 96479 33265381 ~ 33265687 (+) True XLOC_002243
TCONS_00005914 lncRNA upstream 770095 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00005913 lncRNA upstream 1097868 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005725 lncRNA downstream 506081 33870189 ~ 33871012 (+) True XLOC_002252
TCONS_00005916 lncRNA downstream 693183 34057291 ~ 34058317 (+) False XLOC_002256
TCONS_00005917 lncRNA downstream 826434 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005918 lncRNA downstream 874952 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005919 lncRNA downstream 1690203 35054311 ~ 35058561 (+) True XLOC_002269
TCONS_00004291 mRNA upstream 182178 33171501 ~ 33179988 (+) True XLOC_002242
TCONS_00004289 mRNA upstream 573334 32683089 ~ 32788832 (+) True XLOC_002240
TCONS_00004288 mRNA upstream 689658 32663180 ~ 32672508 (+) True XLOC_002239
TCONS_00004287 mRNA upstream 689847 32662886 ~ 32672319 (+) False XLOC_002239
TCONS_00004286 mRNA upstream 713363 32646402 ~ 32648803 (+) True XLOC_002238
TCONS_00004294 mRNA downstream 18750 33382858 ~ 33394568 (+) False XLOC_002246
TCONS_00004295 mRNA downstream 29721 33393829 ~ 33403522 (+) False XLOC_002246
TCONS_00004296 mRNA downstream 29775 33393883 ~ 33398539 (+) True XLOC_002246
TCONS_00004297 mRNA downstream 42711 33406819 ~ 33540336 (+) True XLOC_002247
TCONS_00004298 mRNA downstream 209730 33573838 ~ 33579162 (+) False XLOC_002248
TCONS_00004290 other upstream 359733 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004283 other upstream 966270 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004273 other upstream 1669390 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 2602122 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 2625898 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004303 other downstream 338334 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 671581 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 683252 34047360 ~ 34058765 (+) False XLOC_002256
TCONS_00004316 other downstream 703771 34067879 ~ 34086349 (+) False XLOC_002256
TCONS_00004318 other downstream 744433 34108541 ~ 34120301 (+) True XLOC_002257

Expression Profile

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