Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004298 |
| length | 1520 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 8 |
| gene id | XLOC_002248 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 33573838 ~ 33579162 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0003352 | regulation of cilium movement | biological_process |
| GO:0072114 | pronephros morphogenesis | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0044458 | motile cilium assembly | biological_process |
| GO:0090660 | cerebrospinal fluid circulation | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-040930-8 | Acts upstream of or within several processes, including cerebrospinal fluid circulation; motile cilium assembly; and pronephros morphogenesis. Predicted to be located in cilium; cytoplasm; and cytoskeleton. Is expressed in several structures, including Kupffer's vesicle; axis; mesoderm; pronephros; and sensory system. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 26. Orthologous to human CFAP298 (cilia and flagella associated protein 298). |
| ensembl_id | ENSDART00000051197 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005724 | lncRNA | upstream | 205673 | 33363402 ~ 33368165 (+) | True | XLOC_002245 |
| TCONS_00004293 | lncRNA | upstream | 209730 | 33362166 ~ 33364108 (+) | False | XLOC_002245 |
| TCONS_00005723 | lncRNA | upstream | 211258 | 33360328 ~ 33362580 (+) | False | XLOC_002245 |
| TCONS_00004292 | lncRNA | upstream | 211258 | 33361020 ~ 33362580 (+) | False | XLOC_002245 |
| TCONS_00005722 | lncRNA | upstream | 214812 | 33357844 ~ 33359026 (+) | True | XLOC_002244 |
| TCONS_00005725 | lncRNA | downstream | 291027 | 33870189 ~ 33871012 (+) | True | XLOC_002252 |
| TCONS_00005916 | lncRNA | downstream | 478129 | 34057291 ~ 34058317 (+) | False | XLOC_002256 |
| TCONS_00005917 | lncRNA | downstream | 611380 | 34190542 ~ 34193306 (+) | True | XLOC_002261 |
| TCONS_00005918 | lncRNA | downstream | 659898 | 34239060 ~ 34239838 (+) | True | XLOC_002263 |
| TCONS_00005919 | lncRNA | downstream | 1475149 | 35054311 ~ 35058561 (+) | True | XLOC_002269 |
| TCONS_00004297 | mRNA | upstream | 33502 | 33406819 ~ 33540336 (+) | True | XLOC_002247 |
| TCONS_00004295 | mRNA | upstream | 170316 | 33393829 ~ 33403522 (+) | False | XLOC_002246 |
| TCONS_00004296 | mRNA | upstream | 175299 | 33393883 ~ 33398539 (+) | True | XLOC_002246 |
| TCONS_00004294 | mRNA | upstream | 179270 | 33382858 ~ 33394568 (+) | False | XLOC_002246 |
| TCONS_00004291 | mRNA | upstream | 393850 | 33171501 ~ 33179988 (+) | True | XLOC_002242 |
| TCONS_00004300 | mRNA | downstream | 9553 | 33588715 ~ 33594110 (+) | True | XLOC_002249 |
| TCONS_00004301 | mRNA | downstream | 47182 | 33626344 ~ 33710227 (+) | False | XLOC_002250 |
| TCONS_00004302 | mRNA | downstream | 48267 | 33627429 ~ 33709918 (+) | False | XLOC_002250 |
| TCONS_00004304 | mRNA | downstream | 164936 | 33744098 ~ 33867426 (+) | False | XLOC_002251 |
| TCONS_00004305 | mRNA | downstream | 175805 | 33754967 ~ 33866812 (+) | True | XLOC_002251 |
| TCONS_00004290 | other | upstream | 571405 | 33002319 ~ 33002433 (+) | True | XLOC_002241 |
| TCONS_00004283 | other | upstream | 1177942 | 32395780 ~ 32395896 (+) | True | XLOC_002235 |
| TCONS_00004273 | other | upstream | 1881062 | 31692662 ~ 31692776 (+) | True | XLOC_002225 |
| TCONS_00004262 | other | upstream | 2813794 | 30759929 ~ 30760044 (+) | True | XLOC_002218 |
| TCONS_00004261 | other | upstream | 2837570 | 30736148 ~ 30736268 (+) | True | XLOC_002217 |
| TCONS_00004303 | other | downstream | 123280 | 33702442 ~ 33710220 (+) | True | XLOC_002250 |
| TCONS_00004313 | other | downstream | 456527 | 34035689 ~ 34043319 (+) | True | XLOC_002255 |
| TCONS_00004315 | other | downstream | 468198 | 34047360 ~ 34058765 (+) | False | XLOC_002256 |
| TCONS_00004316 | other | downstream | 488717 | 34067879 ~ 34086349 (+) | False | XLOC_002256 |
| TCONS_00004318 | other | downstream | 529379 | 34108541 ~ 34120301 (+) | True | XLOC_002257 |
