Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_002247 |
| gene name | ryr1a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 33406819 ~ 33540336 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ryr1a | Predicted to enable calcium ion binding activity; calcium-induced calcium release activity; and ryanodine-sensitive calcium-release channel activity. Involved in nervous system development; skeletal muscle fiber development; and smoothened signaling pathway. Acts upstream of or within skeletal muscle contraction. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be part of calcium channel complex. Predicted to be active in several cellular components, including Z disc; endoplasmic reticulum; and sarcolemma. Is expressed in adaxial cell; slow muscle cell; somite; trunk; and trunk musculature. Human ortholog(s) of this gene implicated in central core disease; malignant hyperthermia; and multiminicore disease. Orthologous to human RYR1 (ryanodine receptor 1). |
| id | name | namespace |
|---|---|---|
| GO:0051209 | release of sequestered calcium ion into cytosol | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0003009 | skeletal muscle contraction | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0006874 | cellular calcium ion homeostasis | biological_process |
| GO:0042383 | sarcolemma | cellular_component |
| GO:0034704 | calcium channel complex | cellular_component |
| GO:0005790 | smooth endoplasmic reticulum | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0033017 | sarcoplasmic reticulum membrane | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0030659 | cytoplasmic vesicle membrane | cellular_component |
| GO:0048763 | calcium-induced calcium release activity | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0015278 | calcium-release channel activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005219 | ryanodine-sensitive calcium-release channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020108-2 | Predicted to enable calcium ion binding activity; calcium-induced calcium release activity; and ryanodine-sensitive calcium-release channel activity. Involved in nervous system development; skeletal muscle fiber development; and smoothened signaling pathway. Acts upstream of or within skeletal muscle contraction. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be part of calcium channel complex. Predicted to be active in several cellular components, including Z disc; endoplasmic reticulum; and sarcolemma. Is expressed in adaxial cell; slow muscle cell; somite; trunk; and trunk musculature. Human ortholog(s) of this gene implicated in central core disease; malignant hyperthermia; and multiminicore disease. Orthologous to human RYR1 (ryanodine receptor 1). |
| ensembl_id | ENSDARG00000011422 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00004297 | True | 16015 | mRNA | 0.48 | 105 | 33406819 | 33540336 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_002246 | mdh2 | coding | upstream | 3297 | 33382858 ~ 33403522 (+) |
| XLOC_002245 | NA | coding | upstream | 38654 | 33360328 ~ 33368165 (+) |
| XLOC_002244 | NA | coding | upstream | 47793 | 33357096 ~ 33359026 (+) |
| XLOC_002243 | NA | coding | upstream | 141132 | 33265381 ~ 33265687 (+) |
| XLOC_002242 | myl10 | coding | upstream | 226831 | 33171501 ~ 33179988 (+) |
| XLOC_002248 | cfap298 | coding | downstream | 33502 | 33573838 ~ 33579162 (+) |
| XLOC_002249 | mis18a | coding | downstream | 48379 | 33588715 ~ 33594110 (+) |
| XLOC_002250 | b3glctb | coding | downstream | 86008 | 33626344 ~ 33710227 (+) |
| XLOC_002251 | rxfp2a | coding | downstream | 203762 | 33744098 ~ 33867426 (+) |
| XLOC_002252 | NA | coding | downstream | 329853 | 33870189 ~ 33871012 (+) |
| XLOC_002241 | CU929186.1 | non-coding | upstream | 404386 | 33002319 ~ 33002433 (+) |
| XLOC_002237 | NA | non-coding | upstream | 814748 | 32584417 ~ 32592071 (+) |
| XLOC_002255 | BX548044.4 | non-coding | downstream | 495353 | 34035689 ~ 34043319 (+) |
| XLOC_002257 | BX548044.5 | non-coding | downstream | 568205 | 34108541 ~ 34120301 (+) |
| XLOC_002258 | BX548044.1 | non-coding | downstream | 584085 | 34124421 ~ 34147245 (+) |
| XLOC_002259 | BX548044.2 | non-coding | downstream | 610950 | 34151286 ~ 34171425 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000304_16146512_16201457 | RYR1, RYR1A | coding | CI01000304 | null | 16146201 ~ 16202105 (+) |
