RNA id: TCONS_00005919


Basic Information

Item Value
RNA id TCONS_00005919
length 4129
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_002269
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35054311 ~ 35058561 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agaaaagGATCACACAAAGTTtaggaaaaatatttttattaattcgtTGCCTTAAAGAAAATGTGCACATCACTCCAAACTAAAAGCATTCAGAAATCTTCTACATTGATGGGAAGATCCACTAAAACAACAGTATTGCATAAACCACTTGAATGTCACGTTACTATAAAAgcaccaagaaaaaaaataaaaaggatttGTGACTCTTATTTCATCATTCTGACTTTCTTCTCACAAATTAAAagtttatatttcacaattctgtgattaaaaagtcaaaattgtgtATAGACTTGCATGAAATAAAATCACACTGTAATATAAAAAAGGTCAGCAGTGCAAGGTTTCTCTTCTGATTTTACGTCATAATTCAGAATTTGGAGgaggaaaagaaaaaatatttattataactcGATTTAGATTATTTCCCTTCAAATTCTGAATCCTTCAAATTTTCCCTTCAAACTCAAAGCTGAGAATTTTCATTCGCTTTTCATTTTCTGATTTTATACTTCACAATTCAGTTTTCCTTTTTGAAAGCTGCTTTTATAGCTCACGATTTCAAGGTTATCGTTACATTTTTTACTTCTGATTTTACATCATAATTCACAATTTGGAGGAGGAAAagggaaatatttattataaactatttttttcccttcaaattctgactttatattcaacactgttaaaaaaagtCAACTCAAAATTGAAAGGCACCTTACAGAGCttttaagttgactcaacttaaatagagtcaagtgcagtacttgggttacaggttgagtcaactcaaaaaagctgagaattttaagttttagtttttacagtgaacaatttagaactgtgaaatataaaaaaaacttttacttgTAATGTTTGTTACAGCTCACAATTTATCAAGATACGATTACGAATTCTGATTTTATGCTTcactattcatttttttctttctgaaagcTGCTTTTATATCTCatgtttttcagtttaaataaaaaactgaattgcAAGGTTTTTACaaattctgattctgattttacGACACATAATTGACTCAACATAAATTGTAAactttgagttgactcaacttaaatagagtcaagtgcagtacttaGGATAAGATTTGAGTcgacttttttttacagtaaacagtTCAGAACtgtgaaacaataaaataaaaacttatttactTGAAATGCTAGTTAGAGCTCACAATTTAAGATTTTGAACAAAAGAGTCAGAATTACAAGATCTAAATTCTATAATCAAAATAATTCTGAATTTTCGCTTACAAATTCAGATTTTATGCTTCACAGTTCAGTTTTTCTTTCTAAAGCTGCTTTTATATCTCATGATTTTAGTGTAAAGGAAAAAAACTGAATTGCAAGATTTTTACATCTTCTGATTTTACGTCGTAATACACAATTAGGAGGAGCACAAGGGAAATACTTATTATAAACTCCATTTAGATTTTCCCCCttcaaattctgactttatattcaacactgttaaaaaaagtCGACTCGACTTAGAAAGCTCTGTTATTGCCTCACAATTTTGAGttgagtcaagtgcagtacttgggttaaaagttgagtcaactcaaaaaagtgGAGAATTTTAAGTTGAGTCCATGTTTAGTTTTTACAGTGAAGATTCAGAACTGTGAAATATAAAGAACTTTTTTTACTTAATGCTAGTTACAGCTCACAATTTCAGTaagatatttaaaatttttttttttttttaattgtcaataTATTGACAAAAGAGTCAGAATTCAATATCTAATTTCTATAATcaatataattctgactttttgcgGACAAATTCAGATTTTATGCTTCACAGTTCGTTTTTCTTTCTAAAGCTGCTTTTATAGCTCACTTTttccattttaagaaaaaaatatatgtcaGAATTGCGAGAGAAACTAAAAGATCTATAATTGCaaaaaataagtacaaaaaataacagaaacaaaaaaagcaacaacacaaGCAATGAACAAACAGAAGAGGAAATGAATAAGACatcatcaataataaaatcaagttaacattaaaacacacacacacacacacacacacacactcattcagtaTCTCCACATTTGGGCAGTGTGCttcattattttacaaaaaataaaacaatccagACACATATTGCTTCTTTTCCGCAGTTCGTCTGTTATTACTCACAGCTATAGTTTCTCCTCTCAGAGCTTGACCAGAAAACACGACTAACTCACTTATAGAAAATAAAAGATCCTCAAAAAACCCCAGAAGGGTCAGTCAAATGCACATCTCTTATAAAGAGAACAGGTCATTCAAAATACTGAGCTGACTTCTTAAAACAATGTCGAAACATTCGCCTTTTTAAAAGAGAGATAAGACTTCGTAACTCTTAATTCTGCATGCAAACGAGAGGGCAAGAAAAGTGGGCGAGATTTACTACATGCCCACCAGATGGCAGCACAGTCTGATCTCAAATCAAGGCAGCTTTTGAAAAGGCTCTCTTTgccctatatacagtatatgctttCAGTCTAAATACTATAATAGCGCTCACACAACCTCTAAACACCACCGAAAGGAAAACCAcacgatttaaaaacaaaacaaagctatAGGGAAATCAAGCTAATTTGGTTTTGAATATTTGTAACAAGCAAACCACTGTCCTAATAGAATAAATACTGAGTTACCATGAGGTAACAAAGGCTTTGGTTAAGCGTCTTTTTCTCTCCAGCACCAGTTTAAGCCTAAATCAAAGAAGGGCCTCGACTTCATGTCCAAACTGTACTGTTGTCGAAGAGTTGGTTTATTcagaaagggatagttcacccaaacacaaacatttactcactatttactctccctcaagtgtttccagACCTTCATGTTTTGTGTTctgttgttaaacacaaaagaagatagtttgaAAACAAGggagagtaaacaatgacagaacttTGGGTTTTGGGTGAACTTGTCCCTGTAAGTCGTTTACTTACTCTGGTGTTGTACTAAAGCTGTCAATTTAACCACGACAAGCTGAATTCCacatataataatgatataaacaTATAACACTTAAATGTCATGCTCGCATTTATCCTGTCAATGGCAGCAACTAGTGGACATAAAAAGCTCAAATGTAAATACTTGCTTGTCTGAGGTAAAAGTGTCTGTTGTGTTTGTCACAAGCATGTaacactacactctcagaaacaaaggTACTGGAGAGCTCACTGAGGTGGTGGCCTTTTGAAGGTACAGATTTATTCCTAAATGGTCTATATTGATACATTAAAGGAGCATTGTAGTACATAGATAAACTTAGGagggtatcactttattttgatggtccctttaacgcaTTCTGTTGGATTTAAgctacactgcatctacatgccaactaattctcaatagattataagtagactgttaggttggggttcaTGTAAGTtgacgtacttgcaaagtttcttatagtcagttaaatgtctgttgaaggatcagcatcaacagatattaagcagacagtctaatacttaaatgagaagtaattggcatgtagttgcaatgtaacttttaGTCAACAGAATGTGCAAAAGGGACCATGACAGGAGCGTGACAGCTTTAATTCTGAGTGTGTGTCTGCTTTAGGAATTTTGCATTCATCAGGTTAAATGAATAGTTGTATTTGCACCTAtttgcacccaaaaatgaacaaatgaagatttttacttgcaaaatgaattaaatatcagTTTGTTGTTCACTATACCCTATCACattggtgtccaaactcggtcctggagggcctgtgtcctgcaaattttagttccaaccccctataaaacacacctgaaccagctaatccagctctttgtaggtgtactagaaacttccagggaggtgtgttaaaGAAAGTTAGGACTAAGCTATGcaagactgagtttggacatccctgcccTATCATATATTCCCAgaatgccatatatatatatatatatatatatatatatatatatatatatatatatacagttgaagtcagaattattagcccccttcgaatttgtttcttcttttttaaatatttcccaaatgatgtttaacag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005918 lncRNA upstream 814473 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005917 lncRNA upstream 861005 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005916 lncRNA upstream 995994 34057291 ~ 34058317 (+) False XLOC_002256
TCONS_00005725 lncRNA upstream 1183299 33870189 ~ 33871012 (+) True XLOC_002252
TCONS_00005724 lncRNA upstream 1686146 33363402 ~ 33368165 (+) True XLOC_002245
TCONS_00004341 lncRNA downstream 94380 35152941 ~ 35156528 (+) False XLOC_002270
TCONS_00005920 lncRNA downstream 177787 35236348 ~ 35242028 (+) True XLOC_002271
TCONS_00004348 lncRNA downstream 232670 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005921 lncRNA downstream 311031 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00005922 lncRNA downstream 311258 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00004337 mRNA upstream 42809 35002786 ~ 35011502 (+) False XLOC_002268
TCONS_00004336 mRNA upstream 92553 34958583 ~ 34961758 (+) True XLOC_002267
TCONS_00004329 mRNA upstream 319316 34426256 ~ 34734995 (+) False XLOC_002265
TCONS_00004331 mRNA upstream 320222 34623183 ~ 34734089 (+) False XLOC_002265
TCONS_00004332 mRNA upstream 320265 34685135 ~ 34734046 (+) True XLOC_002265
TCONS_00004340 mRNA downstream 94367 35152928 ~ 35163612 (+) False XLOC_002270
TCONS_00004343 mRNA downstream 94539 35153100 ~ 35163611 (+) True XLOC_002270
TCONS_00004344 mRNA downstream 199090 35257651 ~ 35262368 (+) True XLOC_002272
TCONS_00004345 mRNA downstream 206522 35265083 ~ 35275350 (+) True XLOC_002273
TCONS_00004346 mRNA downstream 217404 35275965 ~ 35312885 (+) False XLOC_002274
TCONS_00004338 other upstream 44874 35002798 ~ 35009437 (+) False XLOC_002268
TCONS_00004339 other upstream 45215 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004333 other upstream 102446 34937548 ~ 34951865 (+) False XLOC_002266
TCONS_00004334 other upstream 102779 34950095 ~ 34951532 (+) False XLOC_002266
TCONS_00004335 other upstream 102779 34951056 ~ 34951532 (+) True XLOC_002266
TCONS_00004342 other downstream 94539 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004347 other downstream 229597 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004360 other downstream 586158 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004361 other downstream 586456 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004370 other downstream 1100406 36158967 ~ 36160287 (+) False XLOC_002289

Expression Profile

//