RNA id: TCONS_00004348


Basic Information

Item Value
RNA id TCONS_00004348
length 547
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_002274
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35275965 ~ 35312885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCCATGTCATAATAAAAGTCTCATTTGATTAATATAATATGCTTtagctgtaaaaataaaaagtccaGATCAAACTTACATCCTTTTTTACACTTTGAGGCCACCTTCTGTTCTTCATTGCTGAGTTAGCATGAAAGTTTGTGGTTTTCATTAGTTGAACAATGACTGAAAGCAGACGTGCTCTAATGCTGCGCTGCTCTCGGAGGGGTGTGAACTTCAGGAAGTTCTCCTGTGTGGAAAAGGCCAAGAAATGAATGGCTCAATCCCCTATTCATTACCAAAAGAGTTGGTCTGGCATGCTTTTCAGCCTTTTCACATATgtgttctctctttctctccctcttcttatttttttctctttttatagAACAGCACCAATACGTGAGACCAGCTTTATTGAGAAAATGAAGAAAACGAATCGAAGCGTTGTGGTGTTTTACGGATCCCAAACAGGGACTGGTGAAGAATTTGCTAACCGACTTTCAAAAGATGCCCATCGCTATGGCATGAAAGGGATGGCAGCTGACCCAGAGGAGTATGACATG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009725 response to hormone biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0010181 FMN binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00020 Citrate cycle (TCA cycle)
ko00620 Pyruvate metabolism
ko00640 Propanoate metabolism
ko00650 Butanoate metabolism
ko00720 Carbon fixation pathways in prokaryotes
ko00680 Methane metabolism
ko00633 Nitrotoluene degradation
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050809-121 Predicted to enable FMN binding activity; NADPH-hemoprotein reductase activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in response to hormone. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in congenital adrenal hyperplasia and cytochrome P450 oxidoreductase deficiency. Orthologous to human POR (cytochrome p450 oxidoreductase).

Ensembl:

ensembl_id ENSDART00000134666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005920 lncRNA upstream 49203 35236348 ~ 35242028 (+) True XLOC_002271
TCONS_00004341 lncRNA upstream 134703 35152941 ~ 35156528 (+) False XLOC_002270
TCONS_00005919 lncRNA upstream 232670 35054311 ~ 35058561 (+) True XLOC_002269
TCONS_00005918 lncRNA upstream 1051393 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005917 lncRNA upstream 1097925 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005921 lncRNA downstream 77361 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00005922 lncRNA downstream 77588 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005923 lncRNA downstream 77588 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005726 lncRNA downstream 154677 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005924 lncRNA downstream 908953 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004345 mRNA upstream 15881 35265083 ~ 35275350 (+) True XLOC_002273
TCONS_00004344 mRNA upstream 28863 35257651 ~ 35262368 (+) True XLOC_002272
TCONS_00004340 mRNA upstream 127619 35152928 ~ 35163612 (+) False XLOC_002270
TCONS_00004343 mRNA upstream 127620 35153100 ~ 35163611 (+) True XLOC_002270
TCONS_00004337 mRNA upstream 279729 35002786 ~ 35011502 (+) False XLOC_002268
TCONS_00004349 mRNA downstream 37520 35329751 ~ 35338595 (+) True XLOC_002275
TCONS_00004350 mRNA downstream 55762 35347993 ~ 35361366 (+) False XLOC_002276
TCONS_00004351 mRNA downstream 60204 35352435 ~ 35355742 (+) False XLOC_002276
TCONS_00004352 mRNA downstream 66444 35358675 ~ 35361366 (+) True XLOC_002276
TCONS_00004353 mRNA downstream 124868 35417099 ~ 35437624 (+) False XLOC_002278
TCONS_00004342 other upstream 134703 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004338 other upstream 281794 35002798 ~ 35009437 (+) False XLOC_002268
TCONS_00004339 other upstream 282135 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004334 other upstream 339699 34950095 ~ 34951532 (+) False XLOC_002266
TCONS_00004360 other downstream 352488 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004361 other downstream 352786 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004370 other downstream 866736 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other downstream 867381 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004384 other downstream 995610 36287841 ~ 36288503 (+) True XLOC_002299

Expression Profile

//