RNA id: TCONS_00004333



Basic Information


Item Value
RNA id TCONS_00004333
length 818
RNA type processed_transcript
GC content 0.45
exon number 2
gene id XLOC_002266
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34937548 ~ 34951865 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATATACGCAGCTTCCAGAGCAAATACAAGTACAGCTTTGAGGAATCTCGGGAGAAATTCTGTCTGGGACTATGAGATGAGTGTCATGGAGAGCTGTGGGATTTAGCACGTTTGTTTTTTGCATCAGAAAgATTCTCAAAGCGGTCAGCGATGTCTGGGATGGACGGCTCGGTGGAGGAGCTCAACAACGCGACAGAAGTGAACAGCCAGAGTTTCCTGCGCTTCAGCCCTACAGTGTCCGTGTCCACCGGAGTGGCCGCTGCCTCCTACGGACGGACTGCTAATGTTTACGTCTACATCTCCATCTTCCTCAGCCTGCTTCTGTTCCTGCTCACCCTCCTCATCATCGCTCTCCACCGGCTGAAGAACATCatctcctccagctcctcctacCCAGAATGCAGCAGCGACGCCGGCAGCTCCTTCACCAACATGGAGATCTGCAGCATTTCCTCACAGAGATCCACCGTGTCCTCGCTGTCCTGACAGAACAGAGACACCATGAGCACACCATGATTGCTACACACATTTGAGACATCATTTGCtatacattagggctgcacggtattggaaaaatctgatattgccaTATTTTGGtttttagttgaagtcagaattattagcccccctgcataTATTTTGCCCTAATTTCTGTATAACGGAGAGCAGactttctcaacacatttctaaacataatagttttaataactcatttctaatagctgatttattttctttgccatgatgacagtaaataatatttgactagatatttttcaagatattagtattcagcttaaagtgacatttaaagcctca

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000143083

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005918 lncRNA upstream 697710 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005917 lncRNA upstream 744242 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005916 lncRNA upstream 879231 34057291 ~ 34058317 (+) False XLOC_002256
TCONS_00005725 lncRNA upstream 1066536 33870189 ~ 33871012 (+) True XLOC_002252
TCONS_00005724 lncRNA upstream 1569383 33363402 ~ 33368165 (+) True XLOC_002245
TCONS_00005919 lncRNA downstream 102446 35054311 ~ 35058561 (+) True XLOC_002269
TCONS_00004341 lncRNA downstream 201076 35152941 ~ 35156528 (+) False XLOC_002270
TCONS_00005920 lncRNA downstream 284483 35236348 ~ 35242028 (+) True XLOC_002271
TCONS_00004348 lncRNA downstream 339366 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005921 lncRNA downstream 417727 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004329 mRNA upstream 202553 34426256 ~ 34734995 (+) False XLOC_002265
TCONS_00004331 mRNA upstream 203459 34623183 ~ 34734089 (+) False XLOC_002265
TCONS_00004332 mRNA upstream 203502 34685135 ~ 34734046 (+) True XLOC_002265
TCONS_00004330 mRNA upstream 324743 34426571 ~ 34612805 (+) False XLOC_002265
TCONS_00004328 mRNA upstream 532780 34394454 ~ 34404768 (+) True XLOC_002264
TCONS_00004336 mRNA downstream 6718 34958583 ~ 34961758 (+) True XLOC_002267
TCONS_00004337 mRNA downstream 50921 35002786 ~ 35011502 (+) False XLOC_002268
TCONS_00004340 mRNA downstream 201063 35152928 ~ 35163612 (+) False XLOC_002270
TCONS_00004343 mRNA downstream 201235 35153100 ~ 35163611 (+) True XLOC_002270
TCONS_00004344 mRNA downstream 305786 35257651 ~ 35262368 (+) True XLOC_002272
TCONS_00004321 other upstream 750559 34175468 ~ 34186989 (+) False XLOC_002260
TCONS_00004320 other upstream 766123 34151286 ~ 34171425 (+) True XLOC_002259
TCONS_00004319 other upstream 790303 34124421 ~ 34147245 (+) True XLOC_002258
TCONS_00004318 other upstream 817247 34108541 ~ 34120301 (+) True XLOC_002257
TCONS_00004316 other upstream 851199 34067879 ~ 34086349 (+) False XLOC_002256
TCONS_00004338 other downstream 50933 35002798 ~ 35009437 (+) False XLOC_002268
TCONS_00004339 other downstream 54030 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004342 other downstream 201235 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004347 other downstream 336293 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004360 other downstream 692854 35644719 ~ 35644798 (+) True XLOC_002282

Expression Profile


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