RNA id: TCONS_00004319



Basic Information


Item Value
RNA id TCONS_00004319
length 1166
RNA type unprocessed_pseudogene
GC content 0.43
exon number 6
gene id XLOC_002258
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34124421 ~ 34147245 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


tctcacaatttatttaaatccacAGATTCATTCTCAAAAAATAACCCACTCTAGCCTAAATAAGGACTGAACCGATGTGAACAGaatcctttACCAACGTTGCGTCTTGGCAAGTCATCTGATGTGCGTCAAGGTGAATTTGTGGTTGCCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGAATCGTCAGCTCTGCTCAAAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATGTAAGAGCACTGGAAACTGGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTTGCTATTCCCTCTGACAGAGTCCGACTCTTCCTTGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATCGAAAAGGCGTTACATTGGAGTGATGATGTTGACTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGaGCCGGAATGAAGCCAGGAGATGTTATTATTGAGATCAATGGGGTAAAGGTGAACACGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGTTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGCGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAGAAGCTGTCATAGTTGGAGATGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACAGTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACAAACACTCAAAGACCTTAATAAAACTGGGTGCTCTTATTGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgatgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGATGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000099626

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005916 lncRNA upstream 66104 34057291 ~ 34058317 (+) False XLOC_002256
TCONS_00005725 lncRNA upstream 253409 33870189 ~ 33871012 (+) True XLOC_002252
TCONS_00005724 lncRNA upstream 756256 33363402 ~ 33368165 (+) True XLOC_002245
TCONS_00004293 lncRNA upstream 760313 33362166 ~ 33364108 (+) False XLOC_002245
TCONS_00004292 lncRNA upstream 761841 33361020 ~ 33362580 (+) False XLOC_002245
TCONS_00005917 lncRNA downstream 43297 34190542 ~ 34193306 (+) True XLOC_002261
TCONS_00005918 lncRNA downstream 91815 34239060 ~ 34239838 (+) True XLOC_002263
TCONS_00005919 lncRNA downstream 907066 35054311 ~ 35058561 (+) True XLOC_002269
TCONS_00004341 lncRNA downstream 1005696 35152941 ~ 35156528 (+) False XLOC_002270
TCONS_00005920 lncRNA downstream 1089103 35236348 ~ 35242028 (+) True XLOC_002271
TCONS_00004317 mRNA upstream 19930 34091763 ~ 34104491 (+) True XLOC_002256
TCONS_00004314 mRNA upstream 19938 34047352 ~ 34104483 (+) False XLOC_002256
TCONS_00004312 mRNA upstream 98296 34010494 ~ 34026125 (+) False XLOC_002254
TCONS_00004311 mRNA upstream 98296 34010494 ~ 34026125 (+) True XLOC_002254
TCONS_00004310 mRNA upstream 102565 34001444 ~ 34021856 (+) False XLOC_002254
TCONS_00004322 mRNA downstream 28231 34175476 ~ 34220126 (+) False XLOC_002260
TCONS_00004323 mRNA downstream 59371 34206616 ~ 34220241 (+) True XLOC_002260
TCONS_00004324 mRNA downstream 88923 34236168 ~ 34236424 (+) True XLOC_002262
TCONS_00004325 mRNA downstream 168474 34315719 ~ 34402535 (+) False XLOC_002264
TCONS_00004326 mRNA downstream 174247 34321492 ~ 34370206 (+) False XLOC_002264
TCONS_00004318 other upstream 4120 34108541 ~ 34120301 (+) True XLOC_002257
TCONS_00004316 other upstream 38072 34067879 ~ 34086349 (+) False XLOC_002256
TCONS_00004315 other upstream 65656 34047360 ~ 34058765 (+) False XLOC_002256
TCONS_00004313 other upstream 81102 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004303 other upstream 414201 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004320 other downstream 4041 34151286 ~ 34171425 (+) True XLOC_002259
TCONS_00004321 other downstream 28223 34175468 ~ 34186989 (+) False XLOC_002260
TCONS_00004333 other downstream 790303 34937548 ~ 34951865 (+) False XLOC_002266
TCONS_00004334 other downstream 802850 34950095 ~ 34951532 (+) False XLOC_002266
TCONS_00004335 other downstream 803811 34951056 ~ 34951532 (+) True XLOC_002266

Expression Profile


//