Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004288 |
| length | 1638 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 9 |
| gene id | XLOC_002239 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 32662886 ~ 32672508 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000707 | meiotic DNA recombinase assembly | biological_process |
| GO:0007131 | reciprocal meiotic recombination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0048476 | Holliday junction resolvase complex | cellular_component |
| GO:0005657 | replication fork | cellular_component |
| GO:0033063 | Rad51B-Rad51C-Rad51D-XRCC2 complex | cellular_component |
| GO:0033065 | Rad51C-XRCC3 complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000400 | four-way junction DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008821 | crossover junction endodeoxyribonuclease activity | molecular_function |
| GO:0008094 | DNA-dependent ATPase activity | molecular_function |
| id | description |
|---|---|
| ko03440 | Homologous recombination |
| ko03460 | Fanconi anemia pathway |
| ko03400 | DNA repair and recombination proteins |
| id | description |
|---|---|
| ZDB-GENE-041010-204 | Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to contribute to crossover junction endodeoxyribonuclease activity and four-way junction DNA binding activity. Predicted to be involved in meiotic DNA recombinase assembly and reciprocal meiotic recombination. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Rad51B-Rad51C-Rad51D-XRCC2 complex and Rad51C-XRCC3 complex. Predicted to be active in replication fork. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group O and hereditary breast ovarian cancer syndrome. Orthologous to human RAD51C (RAD51 paralog C). |
| ensembl_id | ENSDART00000138460 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005914 | lncRNA | upstream | 71109 | 32584417 ~ 32592071 (+) | True | XLOC_002237 |
| TCONS_00005913 | lncRNA | upstream | 398882 | 32259743 ~ 32264298 (+) | True | XLOC_002234 |
| TCONS_00005912 | lncRNA | upstream | 714636 | 31946837 ~ 31948544 (+) | True | XLOC_002229 |
| TCONS_00005720 | lncRNA | upstream | 721004 | 31869282 ~ 31942176 (+) | False | XLOC_002228 |
| TCONS_00005719 | lncRNA | upstream | 894227 | 31742998 ~ 31768953 (+) | True | XLOC_002226 |
| TCONS_00005915 | lncRNA | downstream | 592873 | 33265381 ~ 33265687 (+) | True | XLOC_002243 |
| TCONS_00005721 | lncRNA | downstream | 684588 | 33357096 ~ 33359026 (+) | False | XLOC_002244 |
| TCONS_00005722 | lncRNA | downstream | 685336 | 33357844 ~ 33359026 (+) | True | XLOC_002244 |
| TCONS_00005723 | lncRNA | downstream | 687820 | 33360328 ~ 33362580 (+) | False | XLOC_002245 |
| TCONS_00004292 | lncRNA | downstream | 688512 | 33361020 ~ 33362580 (+) | False | XLOC_002245 |
| TCONS_00004286 | mRNA | upstream | 14377 | 32646402 ~ 32648803 (+) | True | XLOC_002238 |
| TCONS_00004285 | mRNA | upstream | 61800 | 32561317 ~ 32601380 (+) | True | XLOC_002236 |
| TCONS_00004284 | mRNA | upstream | 81806 | 32560667 ~ 32581374 (+) | False | XLOC_002236 |
| TCONS_00004282 | mRNA | upstream | 539976 | 32104305 ~ 32123204 (+) | True | XLOC_002233 |
| TCONS_00004281 | mRNA | upstream | 590391 | 32066537 ~ 32072789 (+) | True | XLOC_002232 |
| TCONS_00004289 | mRNA | downstream | 10581 | 32683089 ~ 32788832 (+) | True | XLOC_002240 |
| TCONS_00004291 | mRNA | downstream | 498993 | 33171501 ~ 33179988 (+) | True | XLOC_002242 |
| TCONS_00004294 | mRNA | downstream | 710350 | 33382858 ~ 33394568 (+) | False | XLOC_002246 |
| TCONS_00004295 | mRNA | downstream | 721321 | 33393829 ~ 33403522 (+) | False | XLOC_002246 |
| TCONS_00004296 | mRNA | downstream | 721375 | 33393883 ~ 33398539 (+) | True | XLOC_002246 |
| TCONS_00004283 | other | upstream | 267284 | 32395780 ~ 32395896 (+) | True | XLOC_002235 |
| TCONS_00004273 | other | upstream | 970404 | 31692662 ~ 31692776 (+) | True | XLOC_002225 |
| TCONS_00004262 | other | upstream | 1903136 | 30759929 ~ 30760044 (+) | True | XLOC_002218 |
| TCONS_00004261 | other | upstream | 1926912 | 30736148 ~ 30736268 (+) | True | XLOC_002217 |
| TCONS_00004255 | other | upstream | 2751484 | 29910622 ~ 29911696 (+) | True | XLOC_002215 |
| TCONS_00004290 | other | downstream | 329811 | 33002319 ~ 33002433 (+) | True | XLOC_002241 |
| TCONS_00004303 | other | downstream | 1029934 | 33702442 ~ 33710220 (+) | True | XLOC_002250 |
| TCONS_00004313 | other | downstream | 1363181 | 34035689 ~ 34043319 (+) | True | XLOC_002255 |
| TCONS_00004315 | other | downstream | 1374852 | 34047360 ~ 34058765 (+) | False | XLOC_002256 |
| TCONS_00004316 | other | downstream | 1395371 | 34067879 ~ 34086349 (+) | False | XLOC_002256 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000304_15785399_15786785.mRNA | True | 1071 | mRNA | 0.44 | 5 | CI01000304 | 15785399 ~ 15787028 (+) |
